Search result

BaseInfo

ncRNA ID novel_bol_miR46
Species Brassica oleracea
Class miRNA
Genome position ChrC2:183055-183188 [-]
Reference genome BOL
Source SRR961924;SRR961925
Length 22
Mature sequence(if miRNA) 113 - UGGAGAAGCAGGGCACGUGCAU - 134
Stem-loop(if miRNA) --   A    CA         CAUU         UCUCUUAGUC     -A       -    -CC  A   C
  UGG GAAG  GGGCACGUG    ACUAACUCA          CACAU  UAUACAC UCUC   CA AUG A
  ||| ||||  |||||||||    |||||||||          |||||  ||||||| ||||   || |||
  ACC CUUC  CCCGUGUAC    UGAUUGAGU          GUGUG  GUGUGUG AGAG   GU UAU U
CU   C    UA         UUCU         ---------U     AA       U    AUA  A   G
Stem-loop sequence UGGAGAAGCAGGGCACGUGCAUUACUAACUCAUCUCUUAGUCCACAUAUAUACACUCUCCCCAAAUGCAUGUAUAUGAUAGAGAUGUGUGUGAAGUGUGUUGAGUUAGUUCUUCAUGUGCCCAUCUUCCCCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013754581.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  =|*=||||||||||||||||||
targets:776   GUUUACGUGCCCUGCUUCUCCA   797

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100 (LOC106316695), mRNA NAC domain-containing protein 100(LOC106316695) coding protein psRNATarget
XM_013740365.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  =|*=||||||||||||||||||
targets:896   GUUUACGUGCCCUGCUUCUCCA   917

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100 (LOC106303998), mRNA NAC domain-containing protein 100(LOC106303998) coding protein psRNATarget
XM_013763086.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  =|*=||||||||||||||||||
targets:814   GUUUACGUGCCCUGCUUCUCCA   835

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100-like (LOC106325060), mRNA NAC domain-containing protein 100-like(LOC106325060) coding protein psRNATarget
XM_013763217.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  |**=||||||||||||||||||
targets:780   ACUUACGUGCCCUGCUUCUCCA   801

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 100-like (LOC106325190), mRNA NAC domain-containing protein 100-like(LOC106325190) coding protein psRNATarget
XM_013771044.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  **|||*||||||||||||||||
targets:748   CAGCAAGUGCCCUGCUUCUCCA   769

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 21/22-like (LOC106332572), mRNA NAC domain-containing protein 21/22-like(LOC106332572) coding protein psRNATarget
XM_013728918.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  **|||*||||||||||||||||
targets:748   CAGCAAGUGCCCUGCUUCUCCA   769

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 21/22 (LOC106293262), mRNA NAC domain-containing protein 21/22(LOC106293262) coding protein psRNATarget
XM_013769589.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  =*|||*||||||||||||||||
targets:863   GAGCAAGUGCCCUGCUUCUCCA   884

1.0 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 21/22 (LOC106331268), mRNA NAC domain-containing protein 21/22(LOC106331268) coding protein psRNATarget
XM_013729784.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  =*|||||||=||||||||||||
targets:625   GAGCACGUGUCCUGCUUCUCCA   646

1.5 PREDICTED: Brassica oleracea var. oleracea protein CUP-SHAPED COTYLEDON 1 (LOC106294200), mRNA protein CUP-SHAPED COTYLEDON 1(LOC106294200) coding protein psRNATarget
XM_013758079.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  |**||||||*|||||||||||=
targets:801   ACUCACGUGACCUGCUUCUCCG   822

2.5 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 92 (LOC106319699), mRNA NAC domain-containing protein 92(LOC106319699) coding protein psRNATarget
XM_013734737.1
ncRNA:22   UACGUGCACGGGACGAAGAGGU   1
  |**||||||*|||||||||||=
targets:986   ACUCACGUGACCUGCUUCUCCG   1007

2.5 PREDICTED: Brassica oleracea var. oleracea NAC domain-containing protein 92-like (LOC106298602), mRNA NAC domain-containing protein 92-like(LOC106298602) coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.