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BaseInfo

ncRNA ID novel_bol_miR45
Species Brassica oleracea
Class miRNA
Genome position ChrC8:41421545-41421659 [-]
Reference genome BOL
Source SRR961924
Length 20
Mature sequence(if miRNA) 1 - UCGGACCAGGCUUCAUCCCC - 20
Stem-loop(if miRNA) --GA   UU      A           AUA      CACGUACA        -     A A
    AUG  GUCUGG CCGAGGAUAUU   UAUACA        UAUAUAUG UUGAU C A
    |||  |||||| |||||||||||   ||||||        |||||||| ||||| |
    UAC  CGGACC GGCUCUUAUGA   AUAUGU        AUAUAUAC AGCUA G G
CCCC   UU      A           GAG      -----AUA        U     - U
Stem-loop sequence GAAUGUUGUCUGGACCGAGGAUAUUAUAUAUACACACGUACAUAUAUAUGUUGAUACAAGUGAUCGAUCAUAUAUAAUAUGUAUAGAGAGUAUUCUCGGACCAGGCUUCAUCCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013732033.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:640   UGGGAUGAAGCCUGGUCCGG   659

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-9 (LOC106295996), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-9(LOC106295996) coding protein psRNATarget
XM_013732032.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:768   UGGGAUGAAGCCUGGUCCGG   787

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-9 (LOC106295996), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-9(LOC106295996) coding protein psRNATarget
XM_013766861.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:966   UGGGAUGAAGCCUGGUCCGG   985

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-8 (LOC106328424), mRNA homeobox-leucine zipper protein ATHB-8(LOC106328424) coding protein psRNATarget
XM_013781810.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:902   UGGGAUGAAGCCUGGUCCGG   921

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-14 (LOC106342776), transcript variant X2, mRNA homeobox-leucine zipper protein ATHB-14(LOC106342776) coding protein psRNATarget
XM_013781809.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:902   UGGGAUGAAGCCUGGUCCGG   921

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-14 (LOC106342776), transcript variant X1, mRNA homeobox-leucine zipper protein ATHB-14(LOC106342776) coding protein psRNATarget
XM_013756089.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:948   UGGGAUGAAGCCUGGUCCGG   967

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein REVOLUTA (LOC106318211), mRNA homeobox-leucine zipper protein REVOLUTA(LOC106318211) coding protein psRNATarget
XM_013756973.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||||||||||||||||||=
targets:1148   UGGGAUGAAGCCUGGUCCGG   1167

1.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein REVOLUTA (LOC106318831), mRNA homeobox-leucine zipper protein REVOLUTA(LOC106318831) coding protein psRNATarget
XM_013766306.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:967   UGGAAUGAAGCCUGGUCCGG   986

2.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-15-like (LOC106327973), mRNA homeobox-leucine zipper protein ATHB-15-like(LOC106327973) coding protein psRNATarget
XM_013767636.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1046   UGGUAUGAAGCCUGGUCCGG   1065

2.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein REVOLUTA-like (LOC106329060), transcript variant X2, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106329060) coding protein psRNATarget
XM_013767635.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1046   UGGUAUGAAGCCUGGUCCGG   1065

2.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein REVOLUTA-like (LOC106329060), transcript variant X1, mRNA homeobox-leucine zipper protein REVOLUTA-like(LOC106329060) coding protein psRNATarget
XM_013782140.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1061   UGGUAUGAAGCCUGGUCCGG   1080

2.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-14 (LOC106343033), mRNA homeobox-leucine zipper protein ATHB-14(LOC106343033) coding protein psRNATarget
XM_013736558.1
ncRNA:20   CCCCUACUUCGGACCAGGCU   1
  *||*|||||||||||||||=
targets:1143   UGGAAUGAAGCCUGGUCCGG   1162

2.0 PREDICTED: Brassica oleracea var. oleracea homeobox-leucine zipper protein ATHB-15 (LOC106300422), mRNA homeobox-leucine zipper protein ATHB-15(LOC106300422) coding protein psRNATarget
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