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BaseInfo

ncRNA ID	novel_bol_miR44
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC2:15370908-15371000 [+]
Reference genome	BOL
Source	SRR961924;SRR961925
Length	22
Mature sequence(if miRNA)	1 - UUGACAGAAGAUAGAGAGCACA - 22
Stem-loop(if miRNA)	--U         -A             U  -      A   UCC    C    UGACAGAAG  UAGAGAGCACAGA GA UGAGAU CAA   GGAA A    |||||||||  ||||||||||||| || |||||| |||   ||||    ACUGUCUUC  AUCUCUCGUGUUU CU AUUCUA GUU   UCUU G ACU         CG             C  C      C   ---    U
Stem-loop sequence	UUGACAGAAGAUAGAGAGCACAGAUGAUGAGAUACAAUCCGGAACAGUUUCUUUGCAUCUUACUCCUUUGUGCUCUCUAGCCUUCUGUCAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013754617.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:2755   UGUGCUCUCUUUCUUCUGUCAA   2776 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea probable L-type lectin-domain containing receptor kinase S.7 (LOC106316741), mRNA	probable L-type lectin-domain containing receptor kinase S.7(LOC106316741)	coding protein	psRNATarget
XM_013781615.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:1129   UGUGCUCUCUCUCUUCUGUCAA   1150 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 9 (LOC106342625), mRNA	squamosa promoter-binding-like protein 9(LOC106342625)	coding protein	psRNATarget
XM_013782113.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:1051   UGUGCUCUCUCUCUUCUGUCAA   1072 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 9 (LOC106343015), mRNA	squamosa promoter-binding-like protein 9(LOC106343015)	coding protein	psRNATarget
XM_013781267.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:777   UGUGCUCUCUCUCUUCUGUCAA   798 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 15 (LOC106342356), mRNA	squamosa promoter-binding-like protein 15(LOC106342356)	coding protein	psRNATarget
XM_013736349.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||| targets:695   UGUGCUCUCUCUCUUCUGUCAA   716 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 15 (LOC106300247), mRNA	squamosa promoter-binding-like protein 15(LOC106300247)	coding protein	psRNATarget
XM_013767867.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:2224   AGUGCUCUCUCUCUUCUGUCAA   2245 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106329242), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106329242)	coding protein	psRNATarget
XM_013742692.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1897   AGUGCUCUCUCUCUUCUGUCAA   1918 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X7, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742687.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1814   AGUGCUCUCUCUCUUCUGUCAA   1835 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742688.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1811   AGUGCUCUCUCUCUUCUGUCAA   1832 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X4, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742685.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1554   AGUGCUCUCUCUCUUCUGUCAA   1575 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013767866.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1577   AGUGCUCUCUCUCUUCUGUCAA   1598 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106329242), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106329242)	coding protein	psRNATarget
XM_013737621.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1432   GGUGCUCUCUCUCUUCUGUCAA   1453 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737622.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1414   GGUGCUCUCUCUCUUCUGUCAA   1435 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737623.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1256   GGUGCUCUCUCUCUUCUGUCAA   1277 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013751939.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1231   GGUGCUCUCUCUCUUCUGUCAA   1252 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013742684.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1425   CGUGCUCUCUCUCUUCUGUCAA   1446 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742681.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1356   CGUGCUCUCUCUCUUCUGUCAA   1377 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742686.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1268   AGUGCUCUCUCUCUUCUGUCAA   1289 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013737624.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1155   GGUGCUCUCUCUCUUCUGUCAA   1176 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737625.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1153   GGUGCUCUCUCUCUUCUGUCAA   1174 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013742683.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1321   CGUGCUCUCUCUCUUCUGUCAA   1342 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742689.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1239   AGUGCUCUCUCUCUUCUGUCAA   1260 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X5, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742691.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1236   AGUGCUCUCUCUCUUCUGUCAA   1257 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X6, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742682.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1298   CGUGCUCUCUCUCUUCUGUCAA   1319 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013751936.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1116   GGUGCUCUCUCUCUUCUGUCAA   1137 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013751937.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||||||*||||||||||| targets:1070   GGUGCUCUCUCUCUUCUGUCAA   1091 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013762722.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||= targets:865   UGUGCUCUCUCUCUUCUGUCAG   886 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013762723.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||= targets:790   UGUGCUCUCUCUCUUCUGUCAG   811 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013762724.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||= targets:763   UGUGCUCUCUCUCUUCUGUCAG   784 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013754743.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||||||||||*||||||||||* targets:1607   UGUGCUCUCUCUCUUCUGUCAU   1628 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106316874), mRNA	squamosa promoter-binding-like protein 13A(LOC106316874)	coding protein	psRNATarget
XM_013730966.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1407   CGUGCUUUCUCUCUUCUGUCAA   1428 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730967.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1343   CGUGCUUUCUCUCUUCUGUCAA   1364 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730972.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||=|||||*||||||||||| targets:1426   AGUGUUCUCUCUCUUCUGUCAA   1447 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013730968.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1315   CGUGCUUUCUCUCUUCUGUCAA   1336 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730969.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1314   CGUGCUUUCUCUCUUCUGUCAA   1335 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X5, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730970.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||=|||||*||||||||||| targets:1322   AGUGUUCUCUCUCUUCUGUCAA   1343 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013730965.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||||=|||*||||||||||| targets:1203   CGUGCUUUCUCUCUUCUGUCAA   1224 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730971.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   *|||=|||||*||||||||||| targets:1108   AGUGUUCUCUCUCUUCUGUCAA   1129 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013770287.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ||*|||||||*||||||||||* targets:1107   UGCGCUCUCUCUCUUCUGUCAU   1128 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106331858), mRNA	squamosa promoter-binding-like protein 13A(LOC106331858)	coding protein	psRNATarget
XM_013771182.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   |*||||||||*||||||||||* targets:1106   UUUGCUCUCUCUCUUCUGUCAU   1127 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106332708), mRNA	squamosa promoter-binding-like protein 13A(LOC106332708)	coding protein	psRNATarget
XM_013783375.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ***|||||||*||||||||||* targets:793   ACCGCUCUCUCUCUUCUGUCAU   814 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 5 (LOC106344002), mRNA	squamosa promoter-binding-like protein 5(LOC106344002)	coding protein	psRNATarget
XM_013740569.1	ncRNA:22   ACACGAGAGAUAGAAGACAGUU   1   ***|||||||*||||||||||* targets:647   CCAGCUCUCUCUCUUCUGUCAU   668 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 5 (LOC106304169), mRNA	squamosa promoter-binding-like protein 5(LOC106304169)	coding protein	psRNATarget