ncRNA ID | novel_bol_miR43 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC8:34448062-34448259 [+] |
Reference genome | BOL |
Source | SRR961924 |
Length | 27 |
Mature sequence(if miRNA) | 172 - AGGGUUUAGGGUUUAGAGUUUAGGAUC - 198 |
Stem-loop(if miRNA) |
---------          -      AAAAC        A           CG     UA  AAUCCAAACCUCAAAUCCUAACUUUAAACUCUAAAAAAACAA          CUCUGAACUC AAACUC     CCUAAAUU UGAACCCGAAC  UAGAC  UG                                          U          |||||||||| ||||||     |||||||| |||||||||||  |||||  ||          GAGAUUUGGG UUUGGG     GGAUUUAG AUUUGGGUUUG  AUUUG  AG                                          A CUAGGAUUU          A      AUCUA        A           AG     --  UUUAGGAUUUGGGAUUUGGGAUUUACAAACCUAAUUACAACU |
Stem-loop sequence | CUCUGAACUCAAACUCAAAACCCUAAAUUAUGAACCCGAACCGUAGACUAUGAAUCCAAACCUCAAAUCCUAACUUUAAACUCUAAAAAAACAAUAUCAACAUUAAUCCAAACAUUUAGGGUUUAGGGUUUAGGAUUUGAGUUUAGAGUUUGGGUUUAAGAUUUAGGAUCUAGGGUUUAGGGUUUAGAGUUUAGGAUC |