ncRNA ID | novel_bol_miR40 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC8:15389122-15389203 [+] |
Reference genome | BOL |
Source | SRR961924;SRR961925 |
Length | 20 |
Mature sequence(if miRNA) | 1 - AUGAACUUGUGUAGUGGAUA - 20 |
Stem-loop(if miRNA) |
---AUG      UGU   G  UA G   U             U       AACUUG   AGU GA  G GCA AACUAAUUUUUUU U       ||||||   ||| ||  | ||| ||||||||||||| U       UUGAGU   UCA UU  U UGU UUGAUUGGAGGAA U UGUAUA      --U   G  -- G   U             A |
Stem-loop sequence | AUGAACUUGUGUAGUGGAUAGGGCAUAACUAAUUUUUUUUUUUAAAGGAGGUUAGUUUUGUGUUUGACUUUGAGUUAUAUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013755427.1 |
|
2.5 | PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106317634 (LOC106317634), mRNA | uncharacterized LOC106317634(LOC106317634) | coding protein | psRNATarget |