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BaseInfo

ncRNA ID novel_bol_miR40
Species Brassica oleracea
Class miRNA
Genome position ChrC8:15389122-15389203 [+]
Reference genome BOL
Source SRR961924;SRR961925
Length 20
Mature sequence(if miRNA) 1 - AUGAACUUGUGUAGUGGAUA - 20
Stem-loop(if miRNA) ---AUG      UGU   G  UA G   U             U
      AACUUG   AGU GA  G GCA AACUAAUUUUUUU U
      ||||||   ||| ||  | ||| ||||||||||||| U
      UUGAGU   UCA UU  U UGU UUGAUUGGAGGAA U
UGUAUA      --U   G  -- G   U             A
Stem-loop sequence AUGAACUUGUGUAGUGGAUAGGGCAUAACUAAUUUUUUUUUUUAAAGGAGGUUAGUUUUGUGUUUGACUUUGAGUUAUAUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013755427.1
ncRNA:20   AUAGGUGAUGUGUUCAAGUA   1
  *||*|||||||||*||||||
targets:1081   AAUACACUACACAUGUUCAU   1100

2.5 PREDICTED: Brassica oleracea var. oleracea uncharacterized LOC106317634 (LOC106317634), mRNA uncharacterized LOC106317634(LOC106317634) coding protein psRNATarget