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BaseInfo

ncRNA ID	novel_bol_miR33
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC1:4212691-4212772 [-]
Reference genome	BOL
Source	SRR961924;SRR961925
Length	22
Mature sequence(if miRNA)	61 - UGACAGAAGAGAGUGAGCACAU - 82
Stem-loop(if miRNA)	--        -   -A        AU   G   CU      U   UGACAGAA GAG  GUGAGCAC  GCA GCA  GUUAUG C   |||||||| |||  ||||||||  ||| |||  ||||||   ACUGUCUU CUC  CACUCGUG  UGU CGU  CAAUAC U UG        U   GG        CG   G   UU      C
Stem-loop sequence	UGACAGAAGAGAGUGAGCACAUGCAGGCACUGUUAUGUCUCCAUAACUUUGCGUGUGCGUGCUCACGGCUCUUUCUGUCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013733156.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *||||||||||||||||||||| targets:871   UUGUGCUCACUCUCUUCUGUCA   892 Target Full Sequence	0.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106296904), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC106296904)	coding protein	psRNATarget
XM_013733155.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *||||||||||||||||||||| targets:856   UUGUGCUCACUCUCUUCUGUCA   877 Target Full Sequence	0.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106296904), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC106296904)	coding protein	psRNATarget
XM_013754743.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1606   UUGUGCUCUCUCUCUUCUGUCA   1627 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106316874), mRNA	squamosa promoter-binding-like protein 13A(LOC106316874)	coding protein	psRNATarget
XM_013781615.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1128   CUGUGCUCUCUCUCUUCUGUCA   1149 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 9 (LOC106342625), mRNA	squamosa promoter-binding-like protein 9(LOC106342625)	coding protein	psRNATarget
XM_013782113.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:1050   CUGUGCUCUCUCUCUUCUGUCA   1071 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 9 (LOC106343015), mRNA	squamosa promoter-binding-like protein 9(LOC106343015)	coding protein	psRNATarget
XM_013762722.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:864   UUGUGCUCUCUCUCUUCUGUCA   885 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X1, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013762723.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:789   UUGUGCUCUCUCUCUUCUGUCA   810 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X2, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013762724.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:762   UUGUGCUCUCUCUCUUCUGUCA   783 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 6 (LOC106324748), transcript variant X3, mRNA	squamosa promoter-binding-like protein 6(LOC106324748)	coding protein	psRNATarget
XM_013781267.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:776   CUGUGCUCUCUCUCUUCUGUCA   797 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 15 (LOC106342356), mRNA	squamosa promoter-binding-like protein 15(LOC106342356)	coding protein	psRNATarget
XM_013736349.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||||||||||||| targets:694   CUGUGCUCUCUCUCUUCUGUCA   715 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 15 (LOC106300247), mRNA	squamosa promoter-binding-like protein 15(LOC106300247)	coding protein	psRNATarget
XM_013767867.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:2223   CAGUGCUCUCUCUCUUCUGUCA   2244 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106329242), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106329242)	coding protein	psRNATarget
XM_013742692.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1896   CAGUGCUCUCUCUCUUCUGUCA   1917 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X7, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742687.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1813   CAGUGCUCUCUCUCUUCUGUCA   1834 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742688.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1810   CAGUGCUCUCUCUCUUCUGUCA   1831 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X4, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742685.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1553   CAGUGCUCUCUCUCUUCUGUCA   1574 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013767866.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1576   CAGUGCUCUCUCUCUUCUGUCA   1597 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106329242), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106329242)	coding protein	psRNATarget
XM_013742684.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1424   CCGUGCUCUCUCUCUUCUGUCA   1445 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742681.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1355   CCGUGCUCUCUCUCUUCUGUCA   1376 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742686.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1267   CAGUGCUCUCUCUCUUCUGUCA   1288 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742683.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1320   CCGUGCUCUCUCUCUUCUGUCA   1341 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013742689.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1238   CAGUGCUCUCUCUCUUCUGUCA   1259 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X5, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742691.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1235   CAGUGCUCUCUCUCUUCUGUCA   1256 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106306180), transcript variant X6, mRNA	squamosa promoter-binding-like protein 10(LOC106306180)	coding protein	psRNATarget
XM_013742682.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **||||||*||||||||||||| targets:1297   CCGUGCUCUCUCUCUUCUGUCA   1318 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106306179), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC106306179)	coding protein	psRNATarget
XM_013735044.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =|*|||||*||||||||||||| targets:830   GUCUGCUCUCUCUCUUCUGUCA   851 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 4 (LOC106298914), mRNA	squamosa promoter-binding-like protein 4(LOC106298914)	coding protein	psRNATarget
XM_013735040.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   =|*|||||*||||||||||||| targets:781   GUUUGCUCUCUCUCUUCUGUCA   802 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 4 (LOC106298910), transcript variant X2, mRNA	squamosa promoter-binding-like protein 4(LOC106298910)	coding protein	psRNATarget
XM_013771182.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|*|||||*||||||||||||| targets:1105   UUUUGCUCUCUCUCUUCUGUCA   1126 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106332708), mRNA	squamosa promoter-binding-like protein 13A(LOC106332708)	coding protein	psRNATarget
XM_013781642.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|*||||==||||||||||||| targets:671   CUUUGCUUGCUCUCUUCUGUCA   692 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 3 (LOC106342644), mRNA	squamosa promoter-binding-like protein 3(LOC106342644)	coding protein	psRNATarget
XM_013771046.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|*||||==||||||||||||| targets:571   CUUUGCUUGCUCUCUUCUGUCA   592 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 3 (LOC106332573), mRNA	squamosa promoter-binding-like protein 3(LOC106332573)	coding protein	psRNATarget
XM_013776738.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|*||||==||||||||||||| targets:606   CUUUGCUUGCUCUCUUCUGUCA   627 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 3 (LOC106337628), mRNA	squamosa promoter-binding-like protein 3(LOC106337628)	coding protein	psRNATarget
XM_013730966.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||||=*||||||||||||| targets:1406   CCGUGCUUUCUCUCUUCUGUCA   1427 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730967.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||||=*||||||||||||| targets:1342   CCGUGCUUUCUCUCUUCUGUCA   1363 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730972.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||=||*||||||||||||| targets:1425   CAGUGUUCUCUCUCUUCUGUCA   1446 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013730968.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||||=*||||||||||||| targets:1314   CCGUGCUUUCUCUCUUCUGUCA   1335 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730969.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||||=*||||||||||||| targets:1313   CCGUGCUUUCUCUCUUCUGUCA   1334 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X5, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730970.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||=||*||||||||||||| targets:1321   CAGUGUUCUCUCUCUUCUGUCA   1342 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013730965.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||||=*||||||||||||| targets:1202   CCGUGCUUUCUCUCUUCUGUCA   1223 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 11 (LOC106295150), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC106295150)	coding protein	psRNATarget
XM_013730971.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   **|||=||*||||||||||||| targets:1107   CAGUGUUCUCUCUCUUCUGUCA   1128 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 10 (LOC106295152), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC106295152)	coding protein	psRNATarget
XM_013770287.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *||*||||*||||||||||||| targets:1106   UUGCGCUCUCUCUCUUCUGUCA   1127 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 13A (LOC106331858), mRNA	squamosa promoter-binding-like protein 13A(LOC106331858)	coding protein	psRNATarget
XM_013783375.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   |***||||*||||||||||||| targets:792   AACCGCUCUCUCUCUUCUGUCA   813 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 5 (LOC106344002), mRNA	squamosa promoter-binding-like protein 5(LOC106344002)	coding protein	psRNATarget
XM_013740569.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   |***||||*||||||||||||| targets:646   ACCAGCUCUCUCUCUUCUGUCA   667 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 5 (LOC106304169), mRNA	squamosa promoter-binding-like protein 5(LOC106304169)	coding protein	psRNATarget
XM_013754617.1	ncRNA:22   UACACGAGUGAGAGAAGACAGU   1   *|||||||*||=|||||||||| targets:2754   UUGUGCUCUCUUUCUUCUGUCA   2775 Target Full Sequence	2.5	PREDICTED: Brassica oleracea var. oleracea probable L-type lectin-domain containing receptor kinase S.7 (LOC106316741), mRNA	probable L-type lectin-domain containing receptor kinase S.7(LOC106316741)	coding protein	psRNATarget
XM_013737621.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1430   AUGGUGCUCUCUCUCUUCUGUCA   1452 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737622.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1412   AUGGUGCUCUCUCUCUUCUGUCA   1434 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737623.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1254   AUGGUGCUCUCUCUCUUCUGUCA   1276 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013751939.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1229   AUGGUGCUCUCUCUCUUCUGUCA   1251 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013737624.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1153   AUGGUGCUCUCUCUCUUCUGUCA   1175 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X4, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013737625.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1151   AUGGUGCUCUCUCUCUUCUGUCA   1173 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106301262), transcript variant X5, mRNA	squamosa promoter-binding-like protein 2(LOC106301262)	coding protein	psRNATarget
XM_013751936.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1114   AUGGUGCUCUCUCUCUUCUGUCA   1136 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget
XM_013751937.1	ncRNA:22   UAC-ACGAGUGAGAGAAGACAGU   1   |||-|||||*||||||||||||| targets:1068   AUGGUGCUCUCUCUCUUCUGUCA   1090 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea squamosa promoter-binding-like protein 2 (LOC106313986), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC106313986)	coding protein	psRNATarget