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BaseInfo

ncRNA ID novel_bol_miR32
Species Brassica oleracea
Class miRNA
Genome position ChrC7:23152957-23153037 [-]
Reference genome BOL
Source SRR961924
Length 24
Mature sequence(if miRNA) 1 - UGGCAUUGGUAGUAAUGAGUGUUC - 24
Stem-loop(if miRNA) --C          C     A        CCA     U   U
   CACUCAUUAC AUCAA GCCACGUA   UGUUC GUU U
   |||||||||| ||||| ||||||||   ||||| |||
   GUGAGUAAUG UGGUU CGGUGCAU   AUAAG CAA C
CUU          A     A        AAC     -   A
Stem-loop sequence CCACUCAUUACCAUCAAAGCCACGUACCAUGUUCUGUUUUCAAACGAAUACAAUACGUGGCAUUGGUAGUAAUGAGUGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013749588.1
ncRNA:24   CUUGUGAGUAAUGAUGGUUACGGU   1
  ||||||*|||||=|||||||||||
targets:774   GAACACGCAUUAUUACCAAUGCCA   797

2.5 PREDICTED: Brassica oleracea var. oleracea probable RNA-dependent RNA polymerase 5 (LOC106312177), mRNA probable RNA-dependent RNA polymerase 5(LOC106312177) coding protein psRNATarget