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BaseInfo

ncRNA ID	novel_bol_miR28
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC7:47448486-47448625 [+]
Reference genome	BOL
Source	SRR961924
Length	24
Mature sequence(if miRNA)	1 - UGAUCUUGUGUUGUGAUGAUAAUC - 24
Stem-loop(if miRNA)	--U     U                    -C    UU   A        U      ACCAU   -    GC    GAUCU GUGUUGUGAUGAUAAUCCGA  UCCA  ACU AAAUCAAC AGUUUC     GAC UCAU  U    ||||| ||||||||||||||||||||  ||||  ||| |||||||| ||||||     ||| ||||    CUAGA CACAACACUACUAUUAGGCU  AGGU  UGG UUUGGUUG UCAAAG     UUG AGUA  U AAU     U                    CA    UC   G        U      AUUAG   U    GU
Stem-loop sequence	UGAUCUUGUGUUGUGAUGAUAAUCCGACUCCAUUACUAAAAUCAACUAGUUUCACCAUGACUCAUGCUUUGAUGAUGUUGAUUAGAAACUUGUUGGUUUGGGUCUUGGAACUCGGAUUAUCAUCACAACACUAGAUCUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013738243.1	ncRNA:24   CUAAUAGUAGUGUUGUGUUCUAGU   1   |||||||||||||||||||||||| targets:2251   GAUUAUCAUCACAACACAAGAUCA   2274 Target Full Sequence	0.0	PREDICTED: Brassica oleracea var. oleracea nicotinate phosphoribosyltransferase 1 (LOC106301772), mRNA	nicotinate phosphoribosyltransferase 1(LOC106301772)	coding protein	psRNATarget
XM_013749211.1	ncRNA:24   CUAAUAGUAGUGUUGUGUUCUAGU   1   ||||||||||||=||||||||||| targets:484   GAUUAUCAUCACGACACAAGAUCA   507 Target Full Sequence	1.5	PREDICTED: Brassica oleracea var. oleracea disease resistance protein TAO1-like (LOC106311888), mRNA	disease resistance protein TAO1-like(LOC106311888)	coding protein	psRNATarget
XM_013756900.1	ncRNA:24   CUAAUAGUAGUGUUGUGUUCUAGU   1   |||||||=|=|||||||||||||| targets:1175   GAUUAUCGUUACAACACAAGAUCA   1198 Target Full Sequence	2.0	PREDICTED: Brassica oleracea var. oleracea probable disease resistance protein RPP1 (LOC106318771), mRNA	probable disease resistance protein RPP1(LOC106318771)	coding protein	psRNATarget