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BaseInfo

ncRNA ID novel_bol_miR26
Species Brassica oleracea
Class miRNA
Genome position ChrC7:44166585-44166664 [+]
Reference genome BOL
Source SRR961924
Length 24
Mature sequence(if miRNA) 57 - UGGCAUUGGUAGUAAUGAGUGUUC - 80
Stem-loop(if miRNA) --C          C     A     A  CCA     C  U
   UACUCAUUAC AUUAA GCCAC UA   UGUUC GU U
   |||||||||| ||||| ||||| ||   ||||| || G
   GUGAGUAAUG UGGUU CGGUG AU   ACAAG CA A
CUU          A     A     C  AAC     -  A
Stem-loop sequence CUACUCAUUACCAUUAAAGCCACAUACCAUGUUCCGUUUGAAACGAACACAAUACGUGGCAUUGGUAGUAAUGAGUGUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013749588.1
ncRNA:24   CUUGUGAGUAAUGAUGGUUACGGU   1
  ||||||*|||||=|||||||||||
targets:774   GAACACGCAUUAUUACCAAUGCCA   797

2.5 PREDICTED: Brassica oleracea var. oleracea probable RNA-dependent RNA polymerase 5 (LOC106312177), mRNA probable RNA-dependent RNA polymerase 5(LOC106312177) coding protein psRNATarget