ncRNA ID | novel_bol_miR26 |
Species | Brassica oleracea |
Class | miRNA |
Genome position | ChrC7:44166585-44166664 [+] |
Reference genome | BOL |
Source | SRR961924 |
Length | 24 |
Mature sequence(if miRNA) | 57 - UGGCAUUGGUAGUAAUGAGUGUUC - 80 |
Stem-loop(if miRNA) |
--C          C     A     A  CCA     C  U    UACUCAUUAC AUUAA GCCAC UA   UGUUC GU U    |||||||||| ||||| ||||| ||   ||||| || G    GUGAGUAAUG UGGUU CGGUG AU   ACAAG CA A CUU          A     A     C  AAC     -  A |
Stem-loop sequence | CUACUCAUUACCAUUAAAGCCACAUACCAUGUUCCGUUUGAAACGAACACAAUACGUGGCAUUGGUAGUAAUGAGUGUUC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013749588.1 |
|
2.5 | PREDICTED: Brassica oleracea var. oleracea probable RNA-dependent RNA polymerase 5 (LOC106312177), mRNA | probable RNA-dependent RNA polymerase 5(LOC106312177) | coding protein | psRNATarget |