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BaseInfo

ncRNA ID	novel_bol_miR17
Species	Brassica oleracea
Class	miRNA
Genome position	ChrC6:7803187-7803260 [+]
Reference genome	BOL
Source	SRR961924;SRR961925
Length	22
Mature sequence(if miRNA)	1 - UGAGCCAAAGAUGACUUGCCGA - 22
Stem-loop(if miRNA)	--U         A          ---A   AU      A    GAGCCAAAG UGACUUGCCG    CCA  GAAUCA A    ||||||||| ||||||||||    |||  |||||| A    CUCGGUUUC GUUGAACGGC    GGU  UUUAGU A UGU         A          CAAC   --      C
Stem-loop sequence	UGAGCCAAAGAUGACUUGCCGACCAAUGAAUCAAAAACUGAUUUUGGCAACCGGCAAGUUGACUUUGGCUCUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013769980.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   *=|||||*|||||||||||||| targets:1115   CUGGCAACUCAUCUUUGGCUCA   1136 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-2-like (LOC106331591), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-2-like(LOC106331591)	coding protein	psRNATarget
XM_013769979.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   *=|||||*|||||||||||||| targets:1163   CUGGCAACUCAUCUUUGGCUCA   1184 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-2-like (LOC106331591), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-2-like(LOC106331591)	coding protein	psRNATarget
XM_013783920.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   **|||||*|||||||||||||| targets:923   CAGGCAAAUCAUCUUUGGCUCA   944 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-2-like (LOC106344539), transcript variant X5, mRNA	nuclear transcription factor Y subunit A-2-like(LOC106344539)	coding protein	psRNATarget
XM_013753874.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   **|||||*|||||||||||||| targets:1040   CAGGCAACUCAUCUUUGGCUCA   1061 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-10 (LOC106316015), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-10(LOC106316015)	coding protein	psRNATarget
XM_013753873.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   **|||||*|||||||||||||| targets:1063   CAGGCAACUCAUCUUUGGCUCA   1084 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-10 (LOC106316015), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10(LOC106316015)	coding protein	psRNATarget
XM_013753875.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   **|||||*|||||||||||||| targets:1065   CAGGCAACUCAUCUUUGGCUCA   1086 Target Full Sequence	1.0	PREDICTED: Brassica oleracea var. oleracea nuclear transcription factor Y subunit A-10 (LOC106316015), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-10(LOC106316015)	coding protein	psRNATarget
XM_013748911.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   **||*|||*||||||||||||= targets:1340   CAGGAAAGACAUCUUUGGCUCG   1361 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea calmodulin-interacting protein 111 (LOC106311662), mRNA	calmodulin-interacting protein 111(LOC106311662)	coding protein	psRNATarget
XM_013774307.1	ncRNA:22   AGCCGUUCAGUAGAAACCGAGU   1   *||*|||**||||||||||||| targets:732   ACGCCAAUGCAUCUUUGGCUCA   753 Target Full Sequence	3.0	PREDICTED: Brassica oleracea var. oleracea ras-related protein RABH1b (LOC106335713), mRNA	ras-related protein RABH1b(LOC106335713)	coding protein	psRNATarget