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BaseInfo

ncRNA ID novel_bol_miR8
Species Brassica oleracea
Class miRNA
Genome position ChrC6:6475904-6475961 [+]
Reference genome BOL
Source SRR961924
Length 25
Mature sequence(if miRNA) 1 - ACUAAAAAAGUUAAGAACCGGCUCC - 25
Stem-loop(if miRNA) --         G           C  CUA
  ACUAAAAAA UUAAGAACCGG UC   U
  ||||||||| ||||||||||| ||
  UGAUUUUUU GAUUCUUGGCC AG   U
AU         A           A  AAU
Stem-loop sequence ACUAAAAAAGUUAAGAACCGGCUCCUAUUUAAGAACCGGUUCUUAGAUUUUUUAGUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013746528.1
ncRNA:25   CCUCGGCCAAGAAUUGAAAAAAUCA   1
  *|||*=|*||*|||||||||||||*
targets:478   CGAGAUGUUUAUUAACUUUUUUAGG   502

3.0 PREDICTED: Brassica oleracea var. oleracea pre-rRNA-processing protein ESF2 (LOC106309493), transcript variant X1, mRNA pre-rRNA-processing protein ESF2(LOC106309493) coding protein psRNATarget
XM_013746529.1
ncRNA:25   CCUCGGCCAAGAAUUGAAAAAAUCA   1
  *|||*=|*||*|||||||||||||*
targets:502   CGAGAUGUUUAUUAACUUUUUUAGG   526

3.0 PREDICTED: Brassica oleracea var. oleracea pre-rRNA-processing protein ESF2 (LOC106309493), transcript variant X2, mRNA pre-rRNA-processing protein ESF2(LOC106309493) coding protein psRNATarget