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BaseInfo

ncRNA ID	novel_bna_miR1390
Species	Brassica napus
Class	miRNA
Genome position	ChrC7:19487201-19487409 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527229
Length	24
Mature sequence(if miRNA)	1 - UAAACCCUAAACCCUAAACCCCUA - 24
Stem-loop(if miRNA)	---------                     ---         -   AUUUAAACCCUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGGUUUAGGGUUUAAGGUUUAGG          UAAACCCUAAACCCUAAACCC   CUAAGCCUU CGA                                                                G          |||||||||||||||||||||   ||||||||| |||          AUUUGGGAUUUGGGAUUUGGG   UUUUAAUUG GAA                                                                C UCAUUUGAG                     AUU         G   CUGUGAUUUUGUAGUUGAGAUUUGGGAUUUGGAAGUUGAGAUUUGGGAUUUGAGAUUUAGGAUU
Stem-loop sequence	UAAACCCUAAACCCUAAACCCCUAAGCCUUCGAAUUUAAACCCUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGGUUUAGGGUUUAAGGUUUAGGGCUUAGGAUUUAGAGUUUAGGGUUUAGAGUUGAAGGUUUAGGGUUUAGAGUUGAUGUUUUAGUGUCAAGGGUUAAUUUUUUAGGGUUUAGGGUUUAGGGUUUAGAGUUUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013886986.1	ncRNA:24   AUCCCCAAAUCCCAAAUCCCAAAU   1   ****||||*||||||||||||||| targets:19   CCCCGGUUCAGGGUUUAGGGUUUA   42 Target Full Sequence	1.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g26800-like (LOC106445419), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At4g26800-like(LOC106445419)	coding protein	psRNATarget
XM_013886978.1	ncRNA:24   AUCCCCAAAUCCCAAAUCCCAAAU   1   ****||||*||||||||||||||| targets:19   CCCCGGUUCAGGGUUUAGGGUUUA   42 Target Full Sequence	1.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At4g26800-like (LOC106445419), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At4g26800-like(LOC106445419)	coding protein	psRNATarget
XM_013835300.1	ncRNA:24   AUCC---CCAAAUCCCAAAUCCCAAAU   1   |=||---||*||||||||||||||||* targets:1848   UGGGUUUGGAUUAGGGUUUAGGGUUUU   1874 Target Full Sequence	2.0	PREDICTED: Brassica napus probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8 (LOC106394738), mRNA	probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 8(LOC106394738)	coding protein	psRNATarget
XM_013885279.1	ncRNA:24   AUCCCCA-AAUCCCAAAUCCCAAAU   1   *****||-||||||||||||||||* targets:494   CUUCUGUCUUAGGGUUUAGGGUUUU   518 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106443727 (LOC106443727), mRNA	uncharacterized LOC106443727(LOC106443727)	coding protein	psRNATarget