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BaseInfo

ncRNA ID	novel_bna_miR1388
Species	Brassica napus
Class	miRNA
Genome position	ChrA1:28013487-28013598 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR527229
Length	20
Mature sequence(if miRNA)	1 - UGAGACCGGUUCGGGUUCUA - 20
Stem-loop(if miRNA)	-- GU   -      G      UUUUGU    U -----AA      AUUUUUUGGGUUUAU   G  CCC AAUCGG UUUCGA      CCAA C       GUUUUG               C   |  ||| |||||| ||||||      |||| |       ||||||   C  GGG UUGGCC AGAGUU      GGUU G       AUUGGG               A AU UU   C      -      -----U    U AAGAUAA      CUUAACCCGAUUAAA
Stem-loop sequence	GGUCCCAAUCGGGUUUCGAUUUUGUCCAAUCAAGUUUUGAUUUUUUGGGUUUAUCAAAAUUAGCCCAAUUCGGGUUAAAUAGAAGUUUGGUUUGAGACCGGUUCGGGUUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013835220.1	ncRNA:20   AUCUUGGGCUUGGCCAGAGU   1   ||||||||||||||||=||| targets:203   UAGAACCCGAACCGGUUUCA   222 Target Full Sequence	1.5	PREDICTED: Brassica napus E3 ubiquitin-protein ligase RHA1B-like (LOC106394654), mRNA	E3 ubiquitin-protein ligase RHA1B-like(LOC106394654)	coding protein	psRNATarget
XM_013803875.1	ncRNA:20   AUCUUGGGCUUGGCCAGAGU   1   ||||||||||||||||=||| targets:222   UAGAACCCGAACCGGUUUCA   241 Target Full Sequence	1.5	PREDICTED: Brassica napus E3 ubiquitin-protein ligase RHA1B-like (LOC106364257), mRNA	E3 ubiquitin-protein ligase RHA1B-like(LOC106364257)	coding protein	psRNATarget
XM_013870702.1	ncRNA:20   AUCUUGGGCUUGGCCAGAGU   1   |=||*|*||||||||||||| targets:1050   UGGAUCACGAACCGGUCUCA   1069 Target Full Sequence	3.0	PREDICTED: Brassica napus caffeoylshikimate esterase-like (LOC106429933), mRNA	caffeoylshikimate esterase-like(LOC106429933)	coding protein	psRNATarget
XM_013794781.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:501   GAGAUAACCGAACCGGUCUCA   521 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106354756 (LOC106354756), transcript variant X3, mRNA	uncharacterized LOC106354756(LOC106354756)	coding protein	psRNATarget
XM_013847868.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:502   GAGAUAACCGAACCGGUCUCA   522 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X7, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget
XM_013847863.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:502   GAGAUAACCGAACCGGUCUCA   522 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X2, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget
XM_013847867.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:514   GAGAUAACCGAACCGGUCUCA   534 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X6, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget
XM_013794779.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:523   GAGAUAACCGAACCGGUCUCA   543 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106354756 (LOC106354756), transcript variant X1, mRNA	uncharacterized LOC106354756(LOC106354756)	coding protein	psRNATarget
XM_013847864.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:524   GAGAUAACCGAACCGGUCUCA   544 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X3, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget
XM_013847862.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:524   GAGAUAACCGAACCGGUCUCA   544 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X1, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget
XM_013794780.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:554   GAGAUAACCGAACCGGUCUCA   574 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106354756 (LOC106354756), transcript variant X2, mRNA	uncharacterized LOC106354756(LOC106354756)	coding protein	psRNATarget
XM_013847865.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:555   GAGAUAACCGAACCGGUCUCA   575 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X4, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget
XM_013847866.1	ncRNA:20   AUCU-UGGGCUUGGCCAGAGU   1   *|||-|*|||||||||||||| targets:555   GAGAUAACCGAACCGGUCUCA   575 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106407079 (LOC106407079), transcript variant X5, mRNA	uncharacterized LOC106407079(LOC106407079)	coding protein	psRNATarget