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BaseInfo

ncRNA ID novel_bna_miR1380
Species Brassica napus
Class miRNA
Genome position ChrA5:14489668-14489823 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 24
Mature sequence(if miRNA) 133 - AUUAUAGAGGUAUACAUUGGAGCA - 156
Stem-loop(if miRNA) --                                     A              A  --    GCUA         C  A
  CUCCAAUGUAUGCCUCUAUAAUAGAGUUUCUCUAUUU UAGGGAAAAAUAUA AG  AUUU    UUUUUAUCU UA A
  ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||    ||||||||| ||
  GAGGUUACAUAUGGAGAUAUUAUCUCAAAGAGAUAAA AUCUCUUUUUAUAU UC  UAGA    AAAAAUGGA AU U
AC                                     -              C  CU    -AUA         A  A
Stem-loop sequence CUCCAAUGUAUGCCUCUAUAAUAGAGUUUCUCUAUUUAUAGGGAAAAAUAUAAAGAUUUGCUAUUUUUAUCUCUAAAUAUAAAGGUAAAAAAUAAGAUUCCUCUAUAUUUUUCUCUAAAAUAGAGAAACUCUAUUAUAGAGGUAUACAUUGGAGCA