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BaseInfo

ncRNA ID novel_bna_miR1378
Species Brassica napus
Class miRNA
Genome position ChrA7:3344456-3344517 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527229
Length 24
Mature sequence(if miRNA) 1 - GGAUGCACUUCCUCGGAAUAUUCC - 24
Stem-loop(if miRNA) --          C  CC  A  -   -    AA
  AAUAUUCCGA GG  GU GU UCC UCGG  U
  |||||||||| ||  || || ||| ||||
  UUAUAAGGCU CC  CA CG AGG AGCC  A
CC          -  UU  -  U   C    AU
Stem-loop sequence AAUAUUCCGACGGCCGUAGUUCCUCGGAAUAUACCGACGGAUGCACUUCCUCGGAAUAUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013842188.1
ncRNA:24   CCUUAUAAGGCUCCUUCACGUAGG   1
  **|||||**=||||||||||||||
targets:1087   CAAAUAUAAUGAGGAAGUGCAUCC   1110

3.0 PREDICTED: Brassica napus uncharacterized LOC106401642 (LOC106401642), mRNA uncharacterized LOC106401642(LOC106401642) coding protein psRNATarget