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BaseInfo

ncRNA ID novel_bna_miR1369
Species Brassica napus
Class miRNA
Genome position ChrC5:7563907-7564023 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR527228
Length 21
Mature sequence(if miRNA) 1 - GUGGGCUUUUAAGAAGACGUU - 21
Stem-loop(if miRNA) --     CUU              C            ---GA GAGUUACAACAAGAGUA
  GUGGG   UUAAGAAGACGUUU AUUGAGUAAUCC     C                 U
  |||||   |||||||||||||| ||||||||||||     |
  CACUC   AAUUCUUCUGCAAA UAACUCAUUAGG     G                 U
AA     AAU              A            GAAAA AAGAGCAAAAACAUGGU
Stem-loop sequence GUGGGCUUUUAAGAAGACGUUUCAUUGAGUAAUCCGACGAGUUACAACAAGAGUAUUUGGUACAAAAACGAGAAGAAAAGGGAUUACUCAAUAAAACGUCUUCUUAAUAACUCACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013881536.1
ncRNA:21   UUGCAGAAGAAUUUUCGGGUG   1
  **|||||||||||||||||**
targets:30   CCCGUCUUCUUAAAAGCCCUA   50

2.5 PREDICTED: Brassica napus 10 kDa chaperonin (LOC106439968), mRNA 10 kDa chaperonin(LOC106439968) coding protein psRNATarget