Search result

BaseInfo

ncRNA ID	ath-miRf10682-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	22
Mature sequence(if miRNA)	NA - AUUUCUGAAACAAAGCAAAAGC - NA
Stem-loop(if miRNA)	U                              C   A      G   U   CU UUG  GCAUUGCAUAUUUCUGAAACAAAGCAAAAG AAA AAAAAU UAU AUG  C   U  |||||||||||||||||||||||||||||| ||| |||||| ||| |||  |   A  CGUAACGUAUAAAGACUUUGUUUCGUUUUU UUU UUUUUA AUG UGC  G   U A                              -   A      -   U   UG UGU
Stem-loop sequence	UGCAUUGCAUAUUUCUGAAACAAAGCAAAAGCAAAAAAAAAUGUAUUAUGCUCUUGUAUUGUGGUCGUUGUAAUUUUUAUUUUUUUUGCUUUGUUUCAGAAAUAUGCAAUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001333026.1	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   |||||||||||||||||||=|| targets:22   GCUUUUGCUUUGUUUCAGAGAU   43 Target Full Sequence	1.5	Arabidopsis thaliana O-methyltransferase family protein mRNA	O-methyltransferase family protein(AT1G33030)	coding protein	psRNATarget
NM_001333027.1	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   |||||||||||||||||||=|| targets:62   GCUUUUGCUUUGUUUCAGAGAU   83 Target Full Sequence	1.5	Arabidopsis thaliana O-methyltransferase family protein mRNA	O-methyltransferase family protein(AT1G33030)	coding protein	psRNATarget
NM_103036.3	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   |||||||||||||||||||=|| targets:62   GCUUUUGCUUUGUUUCAGAGAU   83 Target Full Sequence	1.5	Arabidopsis thaliana O-methyltransferase family protein mRNA	O-methyltransferase family protein(AT1G33030)	coding protein	psRNATarget
AF462839.1	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   |||||||||||||||||||=|| targets:18   GCUUUUGCUUUGUUUCAGAGAU   39 Target Full Sequence	1.5	Arabidopsis thaliana At1g33030/F9L11_18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_112194.4	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   *=||||*=|||||||||||||| targets:392   UUUUUUUUUUUGUUUCAGAAAU   413 Target Full Sequence	2.0	Arabidopsis thaliana nuclear polyadenylated RNA-binding protein mRNA	nuclear polyadenylated RNA-binding protein(AT3G13480)	coding protein	psRNATarget
NM_001338054.1	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   *=||||*=|||||||||||||| targets:329   UUUUUUUUUUUGUUUCAGAAAU   350 Target Full Sequence	2.0	Arabidopsis thaliana nuclear polyadenylated RNA-binding protein mRNA	nuclear polyadenylated RNA-binding protein(AT3G13480)	coding protein	psRNATarget
NM_128242.5	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   **|||||=||||||||||||*| targets:13   AAUUUUGUUUUGUUUCAGAAUU   34 Target Full Sequence	2.5	Arabidopsis thaliana F-box family protein mRNA	F-box family protein(AT2G26850)	coding protein	psRNATarget
NM_001336094.1	ncRNA:22   CGAAAACGAAACAAAGUCUUUA   1   **|||||=||||||||||||*| targets:13   AAUUUUGUUUUGUUUCAGAAUU   34 Target Full Sequence	2.5	Arabidopsis thaliana F-box family protein mRNA	F-box family protein(AT2G26850)	coding protein	psRNATarget