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BaseInfo

ncRNA ID novel_bna_miR1358
Species Brassica napus
Class miRNA
Genome position ChrA5:117369-117447 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR524726
Length 21
Mature sequence(if miRNA) 59 - UUAGAUUCACGCACAAACUCG - 79
Stem-loop(if miRNA) -UGU                     UAU  UCAU    U
    UUUGUGCGUGAAUCUAAUUCG   GC    GUAG A
    |||||||||||||||||||||   ||    |||| A
    AAACACGCACUUAGAUUAGGU   UG    UAUC U
GCUC                     UGU  -UUC    C
Stem-loop sequence UGUUUUGUGCGUGAAUCUAAUUCGUAUGCUCAUGUAGUAAUCCUAUCUUGUUGUUGGAUUAGAUUCACGCACAAACUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013872841.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:1462   GGAGUUUGUGCGUGAAUCUAA   1482

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106432003), mRNA protein argonaute 2-like(LOC106432003) coding protein psRNATarget
XM_013887347.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3237   GGAGUUUGUGCGUGAAUCUAA   3257

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X4, mRNA protein argonaute 2-like(LOC106445727) coding protein psRNATarget
XM_013887345.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3240   GGAGUUUGUGCGUGAAUCUAA   3260

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X2, mRNA protein argonaute 2-like(LOC106445727) coding protein psRNATarget
XM_013887343.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3240   GGAGUUUGUGCGUGAAUCUAA   3260

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X1, mRNA protein argonaute 2-like(LOC106445727) coding protein psRNATarget
XM_013887346.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3240   GGAGUUUGUGCGUGAAUCUAA   3260

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106445727), transcript variant X3, mRNA protein argonaute 2-like(LOC106445727) coding protein psRNATarget
XM_013842146.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3341   GGAGUUUGUGCGUGAAUCUAA   3361

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106401604), mRNA protein argonaute 2-like(LOC106401604) coding protein psRNATarget
XM_013887832.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3344   GGAGUUUGUGCGUGAAUCUAA   3364

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106446146), mRNA protein argonaute 2-like(LOC106446146) coding protein psRNATarget
XM_013789098.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||||||||||||
targets:3363   GGAGUUUGUGCGUGAAUCUAA   3383

0.0 PREDICTED: Brassica napus protein argonaute 2-like (LOC106349171), transcript variant X1, mRNA protein argonaute 2-like(LOC106349171) coding protein psRNATarget
XM_013854735.1
ncRNA:21   GCUCAAACACGCACUUAGAUU   1
  *||||||||||*||||||||=
targets:802   GGAGUUUGUGCCUGAAUCUAG   822

2.5 PREDICTED: Brassica napus uncharacterized LOC106414017 (LOC106414017), mRNA uncharacterized LOC106414017(LOC106414017) coding protein psRNATarget