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BaseInfo

ncRNA ID novel_bna_miR1351
Species Brassica napus
Class miRNA
Genome position ChrC8:18219667-18219770 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR524726
Length 21
Mature sequence(if miRNA) 84 - UAAGAACUCCACCCUAAGAAA - 104
Stem-loop(if miRNA) --        C               A            UU CU       A
  UCUUAGGG GGGGUUCUUAGGAAA UAUAAGAAAUUG  A  UUAAGAA C
  |||||||| ||||||||||||||| ||||||||||||  |  ||||||| U
  AGAAUCCC CCUCAAGAAUCCUUU AUAUUUUUUGAU  U  AAUUCUU G
AA        A               -            UU UC       U
Stem-loop sequence UCUUAGGGCGGGGUUCUUAGGAAAAUAUAAGAAAUUGUUACUUUAAGAAACUGUUUCUUAACUUUUUAGUUUUUUAUAUUUCCUAAGAACUCCACCCUAAGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013829109.1
ncRNA:21   AAAGAAUCCCACCUCAAGAAU   1
  *||||||||||||||||||||
targets:3901   GUUCUUAGGGUGGAGUUCUUA   3921

0.0 PREDICTED: Brassica napus disease resistance protein TAO1-like (LOC106388935), mRNA disease resistance protein TAO1-like(LOC106388935) coding protein psRNATarget
XM_013804174.1
ncRNA:21   AAAGAAUCCCACCUCAAGAAU   1
  *||=|||||||||=|||||||
targets:678   AUUUUUAGGGUGGGGUUCUUA   698

2.5 PREDICTED: Brassica napus uncharacterized LOC106364642 (LOC106364642), mRNA uncharacterized LOC106364642(BNAC05G23510D) coding protein psRNATarget