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BaseInfo

ncRNA ID	novel_bna_miR1346
Species	Brassica napus
Class	miRNA
Genome position	ChrC4:27243832-27243939 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR524726
Length	21
Mature sequence(if miRNA)	88 - AGUGUUGCAGUCUUGUUACUC - 108
Stem-loop(if miRNA)	--       C    U          U           GUA   UAU   AAUUU   AGUGUUG AGUC UGUUACUCUU AUUAAUCAUGG   UGU   CAU     U   ||||||| |||| |||||||||| |||||||||||   |||   |||   UCACAAC UCAG ACAAUGAGAA UAAUUAGUAUC   ACA   GUA     U GA       C    C          C           AAA   UAU   AAUUC
Stem-loop sequence	AGUGUUGCAGUCUUGUUACUCUUUAUUAAUCAUGGGUAUGUUAUCAUAAUUUUUCUUAAAUGUAUACAAAACUAUGAUUAAUCAAGAGUAACACGACUCCAACACUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013836498.1	ncRNA:21   CUCAUUGUUCUGACGUUGUGA   1   *||*|*||||||||||||||| targets:1561   UAGAACCAAGACUGCAACACU   1581 Target Full Sequence	2.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like (LOC106396174), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like(LOC106396174)	coding protein	psRNATarget
XM_013836497.1	ncRNA:21   CUCAUUGUUCUGACGUUGUGA   1   *||*|*||||||||||||||| targets:1561   UAGAACCAAGACUGCAACACU   1581 Target Full Sequence	2.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like (LOC106396174), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like(LOC106396174)	coding protein	psRNATarget
XM_013892706.1	ncRNA:21   CUCAUUGUUCUGACGUUGUGA   1   *||*|*|=||||||||||||| targets:1469   UAGAACCGAGACUGCAACACU   1489 Target Full Sequence	3.0	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like (LOC106450903), mRNA	pentatricopeptide repeat-containing protein At2g45350, chloroplastic-like(LOC106450903)	coding protein	psRNATarget