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BaseInfo

ncRNA ID	novel_bna_miR1341
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:32507515-32507701 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR524726
Length	21
Mature sequence(if miRNA)	167 - AAGGCUUUAUAUUUUCAUCGG - 187
Stem-loop(if miRNA)	--       C   C    U              -U   CCCU   C G      C    C     A    C  A   C       U A  UUCC   GGUGAAA UAU AAGC CUUUCACCGUCGGA  GUA    UCU U UUCUCU CAGU GCAAC ACCA AA CUC GACCAGU C AC    A   ||||||| ||| |||| ||||||||||||||  |||    ||| | |||||| |||| ||||| |||| || ||| ||||||| | ||    A   CUACUUU AUA UUCG GAAAGUGGCGGUCU  UAU    AGA A AAGAGA GUCA CGUUG UGGU UU GAG CUGGUCA G UG    A GG       U   U    -              UC   AACU   U G      A    A     G    C  A   A       C G  UUUU
Stem-loop sequence	GGUGAAACUAUCAAGCUCUUUCACCGUCGGAUGUACCCUUCUCUGUUCUCUCCAGUCGCAACAACCACAAACUCCGACCAGUUCAACUUCCAAAUUUUGUGGCACUGGUCAGAGAUUCUGGUGGUUGCAACUGAAGAGAAGAUAGAUCAAUAUCUUCUGGCGGUGAAAGGCUUUAUAUUUUCAUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013896744.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=|||||||*||||||||||| targets:968   AUGAUGAAAUUAUAAAGCCUU   988 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106454634 (LOC106454634), transcript variant X2, mRNA	uncharacterized LOC106454634(LOC106454634)	coding protein	psRNATarget
XM_013896743.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=|||||||*||||||||||| targets:974   AUGAUGAAAUUAUAAAGCCUU   994 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106454634 (LOC106454634), transcript variant X1, mRNA	uncharacterized LOC106454634(LOC106454634)	coding protein	psRNATarget
XM_013896742.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=|||||||*||||||||||| targets:1018   AUGAUGAAAUUAUAAAGCCUU   1038 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106454633 (LOC106454633), mRNA	uncharacterized LOC106454633(LOC106454633)	coding protein	psRNATarget
XM_013896746.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=*|||||||||||||||||* targets:1246   GUAAUGAAAAUAUAAAGCCUC   1266 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106454635 (LOC106454635), transcript variant X2, mRNA	uncharacterized LOC106454635(LOC106454635)	coding protein	psRNATarget
XM_013896745.1	ncRNA:21   GGCUACUUUUAUAUUUCGGAA   1   *=*|||||||||||||||||* targets:1252   GUAAUGAAAAUAUAAAGCCUC   1272 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106454635 (LOC106454635), transcript variant X1, mRNA	uncharacterized LOC106454635(LOC106454635)	coding protein	psRNATarget