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BaseInfo

ncRNA ID	ath-miRf10679-npr
Species	Arabidopsis thaliana
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - CUCGACCUGGUGGUCGAGUGG - NA
Stem-loop(if miRNA)	-    --U          GGU          -AUG   AGA  GGC   AAA  C        U GCU GAGG   UACUCGACCU   GGUCGAGUGG    GGA   AU   UCC   GU ACUCGACC G ||| ||||   ||||||||||   ||||||||||    |||   ||   |||   || |||||||| UGA CUUC   AUGAGCUGGG   CCAGCUCACU    CCU   UA   AGG   UA UGAGCUGG G    U    UGU          GGU          GAAA   CGG  AGA   GUG  -        G
Stem-loop sequence	GCUGAGGUUACUCGACCUGGUGGUCGAGUGGAUGGGAAGAAUGGCUCCAAAGUCACUCGACCUGGGGGUCGAGUAUGUGGGAAGAAUGGCUCCAAAGUCACUCGACCUGGGGGUCGAGUAUGUCUUCUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF183194.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   ||||||||||||||||||||| targets:449   CCACUCGACCACCAGGUCGAG   469 Target Full Sequence	0.0	Arabidopsis thaliana clone asmbl_2339 unknown mRNA sequence	NA	coding protein	psRNATarget
NM_103391.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   ||||||||||*|||||||||| targets:1104   CCACUCGACCCCCAGGUCGAG   1124 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
NM_103391.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   ||||||||||||*|||||||| targets:1150   CCACUCGACCACGAGGUCGAG   1170 Target Full Sequence	1.5	Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA	DNAse I-like superfamily protein(AT1G40390)	coding protein	psRNATarget
AY227642.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   |||||||||*||||||||||| targets:808   CCACUCGACAACCAGGUCGAG   828 Target Full Sequence	1.5	Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds	NA	coding protein	psRNATarget
EF183042.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   ||||||||||||*|||||||| targets:1526   CCACUCGACCACGAGGUCGAG   1546 Target Full Sequence	1.5	Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   |=||||||||*|||||||||| targets:187   CUACUCGACCCCCAGGUCGAG   207 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT025674.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   *=|||||||||||||||||*| targets:108   AUACUCGACCACCAGGUCGCG   128 Target Full Sequence	1.5	Arabidopsis thaliana	NA	coding protein	psRNATarget
BT014714.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   *=||||||||*|||||||||| targets:136   AUACUCGACCCCCAGGUCGAG   156 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636.1 mRNA sequence	NA	coding protein	psRNATarget
BT015478.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   *=||||||||*|||||||||| targets:136   AUACUCGACCCCCAGGUCGAG   156 Target Full Sequence	1.5	Arabidopsis thaliana At4g05636 mRNA sequence	NA	coding protein	psRNATarget
BT012022.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:34   UCACUCUACCAACAGGUCGAG   54 Target Full Sequence	2.5	Arabidopsis thaliana At2g10890 mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:317   UCACUCUACCAACAGGUCGAG   337 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:365   UCACUCUACCAACAGGUCGAG   385 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:413   UCACUCUACCAACAGGUCGAG   433 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183192.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*|||||||*|||||| targets:656   UCACUCUACCACCAAGUCGAG   676 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:692   UCACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:740   UCACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:788   UCACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183193.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*|||||||*|||||| targets:1031   UCACUCUACCACCAAGUCGAG   1051 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:692   UCACUCUACCAACAGGUCGAG   712 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:740   UCACUCUACCAACAGGUCGAG   760 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:788   UCACUCUACCAACAGGUCGAG   808 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
EF183191.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*|||||||*|||||| targets:1031   UCACUCUACCACCAAGUCGAG   1051 Target Full Sequence	2.5	Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   ||||||*|||||*|||||||| targets:44   CCACUCAACCACAAGGUCGAG   64 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget
DQ069808.1	ncRNA:21   GGUGAGCUGGUGGUCCAGCUC   1   =|||||*||||*||||||||| targets:145   UCACUCUACCAACAGGUCGAG   165 Target Full Sequence	2.5	Arabidopsis thaliana At2g10880 mRNA, partial sequence	NA	coding protein	psRNATarget