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BaseInfo

ncRNA ID	novel_bna_miR1336
Species	Brassica napus
Class	miRNA
Genome position	ChrA9:23025167-23025249 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR524726
Length	21
Mature sequence(if miRNA)	1 - ACUCUUUCCUAAGAAACCCUC - 21
Stem-loop(if miRNA)	--U         A               GA          A    GGUUUCUUA GAAGGAGUUUUUAGG  AAUAUAAGAA C    ||||||||| |||||||||||||||  |||||||||| A    CCAAAGAAU CUUUCUCAAGAAUCC  UUAUAUUCUU G CUC         C               UC          U
Stem-loop sequence	UGGUUUCUUAAGAAGGAGUUUUUAGGGAAAUAUAAGAAACAGUUUCUUAUAUUCUCCUAAGAACUCUUUCCUAAGAAACCCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013829587.1	ncRNA:21   CUCCCAAAGAAUCCUUUCUCA   1   **||||||||||*|||||||* targets:61   UUGGGUUUCUUACGAAAGAGA   81 Target Full Sequence	2.5	PREDICTED: Brassica napus casein kinase I isoform delta-like (LOC106389351), transcript variant X3, mRNA	casein kinase I isoform delta-like(LOC106389351)	coding protein	psRNATarget
XM_013829568.1	ncRNA:21   CUCCCAAAGAAUCCUUUCUCA   1   **||||||||||*|||||||* targets:61   UUGGGUUUCUUACGAAAGAGA   81 Target Full Sequence	2.5	PREDICTED: Brassica napus casein kinase I isoform delta-like (LOC106389351), transcript variant X1, mRNA	casein kinase I isoform delta-like(LOC106389351)	coding protein	psRNATarget
XM_013829577.1	ncRNA:21   CUCCCAAAGAAUCCUUUCUCA   1   **||||||||||*|||||||* targets:45   UUGGGUUUCUUACGAAAGAGA   65 Target Full Sequence	2.5	PREDICTED: Brassica napus casein kinase I isoform delta-like (LOC106389351), transcript variant X2, mRNA	casein kinase I isoform delta-like(LOC106389351)	coding protein	psRNATarget