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BaseInfo

ncRNA ID	novel_bna_miR1327
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:27287446-27287579 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR521271;SRR524726;SRR527228;SRR527229
Length	21
Mature sequence(if miRNA)	114 - CAUGUGCCCAUCUUCCCCAUC - 134
Stem-loop(if miRNA)	--   A    CA         CAUU         UCUCUUAGUC     -A       -    -CC  A   C   UGG GAAG  GGGCACGUG    ACUAACUCA          CACAU  UAUACAC UCUC   CA AUG A   ||| ||||  |||||||||    |||||||||          |||||  ||||||| ||||   || |||   ACC CUUC  CCCGUGUAC    UGAUUGAGU          GUGUG  GUGUGUG AGAG   GU UAU U CU   C    UA         UUCU         ---------U     AA       U    AUA  A   G
Stem-loop sequence	UGGAGAAGCAGGGCACGUGCAUUACUAACUCAUCUCUUAGUCCACAUAUAUACACUCUCCCCAAAUGCAUGUAUAUGAUAGAGAUGUGUGUGAAGUGUGUUGAGUUAGUUCUUCAUGUGCCCAUCUUCCCCAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013862286.1	ncRNA:21   CUACCCCUUCUACCCGUGUAC   1   **||||*|||||||||*|||| targets:449   UCUGGGCAAGAUGGGCUCAUG   469 Target Full Sequence	2.5	PREDICTED: Brassica napus beta-carotene 3-hydroxylase 2, chloroplastic-like (LOC106421444), mRNA	beta-carotene 3-hydroxylase 2, chloroplastic-like(LOC106421444)	coding protein	psRNATarget
XM_013845691.1	ncRNA:21   CUACCCCUUCUACCCGUGUAC   1   **||||*|||||||||*|||| targets:479   UCUGGGCAAGAUGGGCUCAUG   499 Target Full Sequence	2.5	PREDICTED: Brassica napus beta-carotene 3-hydroxylase 2, chloroplastic-like (LOC106405085), transcript variant X1, mRNA	beta-carotene 3-hydroxylase 2, chloroplastic-like(LOC106405085)	coding protein	psRNATarget
XM_013862307.1	ncRNA:21   CUACCCCUUCUACCCGUGUAC   1   **||||*|||||||||*|||| targets:449   UCUGGGCAAGAUGGGCUCAUG   469 Target Full Sequence	2.5	PREDICTED: Brassica napus beta-carotene 3-hydroxylase 2, chloroplastic-like (LOC106421466), mRNA	beta-carotene 3-hydroxylase 2, chloroplastic-like(LOC106421466)	coding protein	psRNATarget