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BaseInfo

ncRNA ID novel_bna_miR1319
Species Brassica napus
Class miRNA
Genome position ChrC6:11499676-11499752 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR521271
Length 21
Mature sequence(if miRNA) 57 - CUGAAGUGUUUGGGGGAACUC - 77
Stem-loop(if miRNA) --       UG         U     A   C    AUUU
  GUUCCUC  AGCACUUCA UGGAG UAC GUUU    U
  |||||||  ||||||||| ||||| ||| ||||    C
  CAAGGGG  UUGUGAAGU ACCUU AUG UAAA    U
CU       GU         C     -   -    ACUA
Stem-loop sequence GUUCCUCUGAGCACUUCAUUGGAGAUACCGUUUAUUUUCUAUCAAAAUGUAUUCCACUGAAGUGUUUGGGGGAACUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
FJ626850.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  |||||||=||||||||||||*
targets:338   GAGUUCCUCCAAACACUUCAU   358

2.0 Brassica napus ATP sulfurylase 4 mRNA, complete cds NA coding protein psRNATarget
NM_001315829.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  |||||||=||||||||||||*
targets:338   GAGUUCCUCCAAACACUUCAU   358

2.0 Brassica napus ATP sulfurylase 4, chloroplastic (LOC106410303), mRNA ATP sulfurylase 4, chloroplastic(LOC106410303) coding protein psRNATarget
XM_013888737.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  ||||*||=|||||||||||||
targets:1095   GAGUGCCUCCAAACACUUCAG   1115

2.0 PREDICTED: Brassica napus uncharacterized LOC106446918 (LOC106446918), mRNA uncharacterized LOC106446918(LOC106446918) coding protein psRNATarget
NM_001315588.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  *|||||=|||||||||||||*
targets:107   AAGUUCUCCCAAACACUUCAA   127

2.0 Brassica napus sulfate transporter 2.1 (LOC106383119), mRNA sulfate transporter 2.1(LOC106383119) coding protein psRNATarget
FJ471539.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  *|||||=|||||||||||||*
targets:107   AAGUUCUCCCAAACACUUCAA   127

2.0 Brassica napus low affinity sulfate transporter Bnst2-1 mRNA, complete cds NA coding protein psRNATarget
XM_013859223.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  *|||||=|||||||||||||*
targets:109   AAGUUCUCCCAAACACUUCAA   129

2.0 PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106418501), mRNA sulfate transporter 2.1-like(LOC106418501) coding protein psRNATarget
XM_013812709.1
ncRNA:21   CUCAAGGGGGUUUGUGAAGUC   1
  *|||||=|||||||||||||*
targets:129   AAGUUCUCCCAAACACUUCAA   149

2.0 PREDICTED: Brassica napus sulfate transporter 2.1-like (LOC106372486), mRNA sulfate transporter 2.1-like(LOC106372486) coding protein psRNATarget