Search result

BaseInfo

ncRNA ID	novel_bna_miR1308
Species	Brassica napus
Class	miRNA
Genome position	ChrC2:5982554-5982677 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR521271
Length	23
Mature sequence(if miRNA)	102 - UCAACUCUAAACCCUAAACCCUU - 124
Stem-loop(if miRNA)	--  A               C   U     C   A        G    A AUC        G   UC ACUCUAAACCCUAAA CCU AAUCU CAA UCUAAACC UAAA C   AACUCUAG G   || ||||||||||||||| ||| ||||| ||| |||||||| |||| |   ||||||||   AG UGAGAUUUGGGAUUU GGA UUGGA GUU AGAUUUGG AUUU G   UUGGGAUU U GU  A               A   U     A   G        G    A GAU        U
Stem-loop sequence	UCAACUCUAAACCCUAAACCCUUAAUCUCCAAAUCUAAACCGUAAAACAUCAACUCUAGGGUUUUAGGGUUUAGGAUUUAGGGUUUAGAGUUGAAGGUUUAGGAUUUAGGGUUUAGAGUAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013858913.1	ncRNA:23   UUCCCAAAUCCCAAAUCUCAACU   1   ****|||||||||||||||||*= targets:3352   UCUAGUUUAGGGUUUAGAGUUUG   3374 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106418250 (LOC106418250), mRNA	uncharacterized LOC106418250(LOC106418250)	coding protein	psRNATarget
XM_013867171.1	ncRNA:23   UUCCCAAAUCCCAAAUCUCAACU   1   ****|||||||||||||||||*= targets:3353   UCUAGUUUAGGGUUUAGAGUUUG   3375 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106426451 (LOC106426451), mRNA	uncharacterized LOC106426451(LOC106426451)	coding protein	psRNATarget
XM_013873118.1	ncRNA:23   UUCCCAAAUCCCAAAUCUCAACU   1   **|*|||*|||||||||=||||| targets:150   UUGAGUUGAGGGUUUAGGGUUGA   172 Target Full Sequence	2.5	PREDICTED: Brassica napus somatic embryogenesis receptor kinase 1 (LOC106432272), mRNA	somatic embryogenesis receptor kinase 1(LOC106432272)	coding protein	psRNATarget