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BaseInfo

ncRNA ID novel_bna_miR1301
Species Brassica napus
Class miRNA
Genome position ChrA5:23041120-23041328 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR521271
Length 22
Mature sequence(if miRNA) 1 - AAAUCCUAAACUCUAAACCAUA - 22
Stem-loop(if miRNA) --     C                   AAUAAAUAA          --C    AC      ------       -         AU            AUU     A GG U
  AAAUC UAAACUCUAAACCAUAAAU         UAAACCAUAA   CCAA  CCUAAA      AUUAUAA CUUUAAACC  AAACUCUAAAUC   GAUCU G  U U
  ||||| |||||||||||||||||||         ||||||||||   ||||  ||||||      ||||||| |||||||||  ||||||||||||   ||||| |  | A
  UUUGG AUUUGAGAUUUGGUAUUUA         AUUUGGUAUU   GGUU  GGAUUU      UAAUAUU GGGAUUUGG  UUUGAGAUUUGG   UUAGA U  G G
GA     A                   -------AA          UUC    GA      GAGAUU       U         GU            GAU     A UU G
Stem-loop sequence AAAUCCUAAACUCUAAACCAUAAAUAAUAAAUAAUAAACCAUAACCCAAACCCUAAAAUUAUAACUUUAAACCAUAAACUCUAAAUCAUUGAUCUAGGGUUUAGGGUUUAAGAUUUAGGGUUUAGAGUUUUGGGUUUAGGGUUUAUAAUUUAGAGUUUAGGAGUUGGCUUUUAUGGUUUAAAAUUUAUGGUUUAGAGUUUAAGGUUUAG