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BaseInfo

ncRNA ID	novel_bna_miR1300
Species	Brassica napus
Class	miRNA
Genome position	ChrA5:34121834-34121978 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR521271
Length	20
Mature sequence(if miRNA)	126 - GUCAUGCUGGUAGCUUCACC - 145
Stem-loop(if miRNA)	--UU                  U    UC     -       ----       --UAUAACUA   U        A     AAGCUGCCAGCAUGAUCU GUCU  CUCUC CUAAGCU    UCAUAUA          AGC AAGGAAAU A     |||||||||||||||||| ||||  ||||| |||||||    |||||||          ||| |||||||| A     UUCGAUGGUCGUACUGGA CAGA  GAGAG GAUUCGA    AGUAUAU          UUG UUCUUUUA U CCAC                  U    GA     A       UAAU       UAGAAUACUC   -        A
Stem-loop sequence	UUAAGCUGCCAGCAUGAUCUUGUCUUCCUCUCCUAAGCUUCAUAUAUAUAACUAAGCUAAGGAAAUAAAUAAUUUUCUUGUUCUCAUAAGAUUAUAUGAUAAUAGCUUAGAGAGAGAGAGACUAGGUCAUGCUGGUAGCUUCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013837219.1	ncRNA:20   CCACUUCGAUGGUCGUACUG   1   *||||||||=|||||||||= targets:3313   AGUGAAGCUGCCAGCAUGAU   3332 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g63370, chloroplastic (LOC106396743), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g63370, chloroplastic(LOC106396743)	coding protein	psRNATarget
XM_013837220.1	ncRNA:20   CCACUUCGAUGGUCGUACUG   1   *||||||||=|||||||||= targets:3331   AGUGAAGCUGCCAGCAUGAU   3350 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g63370, chloroplastic (LOC106396743), transcript variant X4, mRNA	pentatricopeptide repeat-containing protein At3g63370, chloroplastic(LOC106396743)	coding protein	psRNATarget
XM_013837218.1	ncRNA:20   CCACUUCGAUGGUCGUACUG   1   *||||||||=|||||||||= targets:3346   AGUGAAGCUGCCAGCAUGAU   3365 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g63370, chloroplastic (LOC106396743), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g63370, chloroplastic(LOC106396743)	coding protein	psRNATarget
XM_013837217.1	ncRNA:20   CCACUUCGAUGGUCGUACUG   1   *||||||||=|||||||||= targets:3424   AGUGAAGCUGCCAGCAUGAU   3443 Target Full Sequence	2.5	PREDICTED: Brassica napus pentatricopeptide repeat-containing protein At3g63370, chloroplastic (LOC106396743), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g63370, chloroplastic(LOC106396743)	coding protein	psRNATarget