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BaseInfo

ncRNA ID ath-miRf10675-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - CACUCGACCUCGGGGUCGAGUGGU - NA
Stem-loop(if miRNA)     -          GG          -U  G  G A
AGAC ACUCGACCUC  GGUCGAGUGG  GA GU A G
|||| ||||||||||  ||||||||||  || || | U
UCUG UGAGCUGGGG  CCAGCUCAUC  CU UA U G
    G          GA          UC  G  G G
Stem-loop sequence AGACACUCGACCUCGGGGUCGAGUGGUGAGGUGAAGUGGUGAUGUCCUCUACUCGACCAGGGGGUCGAGUGGUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AY227642.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  ||||||||||||||||||||||||
targets:853   ACCACUCGACCCCGAGGUCGAGUG   876

0.0 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  |=||||||||||||||||||||||
targets:1616   AUCACUCGACCCCGAGGUCGAGUG   1639

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  |||||||||||*||||||||||||
targets:1149   ACCACUCGACCACGAGGUCGAGUG   1172

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  ||||||||||||||*|||||||||
targets:1208   ACCACUCGACCCCGUGGUCGAGUG   1231

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
EF183005.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  =*|||||||||=||||||||||||
targets:1863   GGCACUCGACCUCGAGGUCGAGUG   1886

1.5 Arabidopsis thaliana clone asmbl_10069 unknown mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGGU--GAGCUGGGGCUCCAGCUCAC   1
  ||||--|||||||||*||||||||||
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

1.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGGU--GAGCUGGGGCUCCAGCUCAC   1
  ||||--|||||||||*||||||||||
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

1.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
AY227642.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  ||||||||||||*||||||||||*
targets:762   ACCACUCGACCCAGAGGUCGAGUA   785

2.5 Arabidopsis thaliana hypothetical protein (At2g13400/F14O4.3) mRNA, complete cds NA coding protein psRNATarget
EF183042.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  |||||||||||*|||||||||||*
targets:1525   ACCACUCGACCACGAGGUCGAGUA   1548

2.5 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  |||||||||||||*|||||||||*
targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
NM_103391.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  |*|||||||||||||||||||*|*
targets:1058   AGCACUCGACCCCGAGGUCGACUA   1081

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
AY231407.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  ||||||||||||||*||||||||*
targets:488   ACCACUCGACCCCGUGGUCGAGUA   511

2.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:24   UGGUGAGCUGGGGCUCCAGCUCAC   1
  *|=||||||||||*|||||||||*
targets:186   UCUACUCGACCCCCAGGUCGAGUA   209

2.5 Arabidopsis thaliana NA coding protein psRNATarget