Search result

BaseInfo

ncRNA ID	ath-miR846-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr1:22577375-22577733 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	52 - CAUUCAAGGACUUCUAUUCAG - 72
Stem-loop(if miRNA)	-CAAA   --C      ---   UU  -GGU   U        UGCCAC   C   U C       G     U         A   U   U     C   A  A  U            U     C    A         AUUCAAGGGACAAAA     ---- UGGGAUAUAUGAUUAUGACAAACACGAUUG      CAU   UUGAAU   CCG  GA    UGA CACGAUGA      AUC GGU U AUUCAAG ACUUC AUUCAGAAC AAC UCA GAUUU UGA CU AU GGAUAUGAUAAA GGUAA AAGU UUCACUUGC               AAUCA    U                              G      |||   ||||||   |||  ||    ||| ||||||||      ||| ||| | ||||||| ||||| ||||||||| ||| ||| ||||| ||| || || |||||||||||| ||||| |||| |||||||||               |||||    |      GUA   AGCUUA   GGC  CU    GCU GUGUUAUU      UAG CCA A UAAGUUC UGAAG UAAGUUUUG UUG AGU CUGAA GCU GA UA CCUAUACUAUUU UCAUU UUCA AGGUGAACG               CUAGU    G                              A AACCA   AUC      AAU   -C  AUGU   C        ------   A   C U       G     U         A   U   U     A   C  C  C            -     C    A         --------------U     AAUA GGUGACGAACGGAGGGCGUUGGUAAGUCGA
Stem-loop sequence	CAAACAUCUUGAAUCCGUUGAGGUUGAUCACGAUGAUGCCACAUCCGGUUUCAUUCAAGGACUUCUAUUCAGAACAAACUUCAUGAUUUCUGAACUAAUUGGAUAUGAUAAAUGGUAACAAGUAUUCACUUGCAUUCAAGGGACAAAAAAUCAUUGGGAUAUAUGAUUAUGACAAACACGAUUGGAAGCUGAAUGGUUGCGGGAGGCAAGCAGUGGGAUAAUGAUCUGCAAGUGGAAACUUCUUACUUUUAUCAUAUCCCAUCAGCUCGAAAGUCUUGAUGUUAGUUUUGAAUUGAAGUGCUUGAAUUACACCAGAUUUAUUGUGCUCGUGUAUCCCGGUAAAUUCGACUAAUGACCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY080696.1	ncRNA:21   GACUUAUCUUCAGGAACUUAC   1   *||=||||||*|||||||||| targets:1654   AUGGAUAGAAAUCCUUGAAUG   1674 Target Full Sequence	2.5	Arabidopsis thaliana putative NBS/LRR disease resistance protein (At5g63020) mRNA, partial cds	NA	coding protein	psRNATarget
NM_125696.4	ncRNA:21   GACUUAUCUUCAGGAACUUAC   1   *||=||||||*|||||||||| targets:2675   AUGGAUAGAAAUCCUUGAAUG   2695 Target Full Sequence	2.5	Arabidopsis thaliana Disease resistance protein (CC-NBS-LRR class) family mRNA	Disease resistance protein (CC-NBS-LRR class) family(AT5G63020)	coding protein	psRNATarget

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).
3	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).