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BaseInfo

ncRNA ID novel_bna_miR1296
Species Brassica napus
Class miRNA
Genome position ChrC9:560455-560526 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 23
Mature sequence(if miRNA) 1 - UUACCAGUAAGUCGUCUCCGGAA - 23
Stem-loop(if miRNA) --    C            CC  AAAAACA     UU
  UUAC AGUAAGUCGUCU  GG       AAAAU  C
  |||| ||||||||||||  ||       |||||
  AAUG UUAUUCAGCAGA  UC       UUUUA  A
UG    U            --  GAAAUUA     UA
Stem-loop sequence UUACCAGUAAGUCGUCUCCGGAAAAACAAAAAUUUCAAUAUUUUAUUAAAGCUAGACGACUUAUUUGUAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013884244.1
ncRNA:23   AAGGCCUCUGCUGAAUGACCAUU   1
  *|=||*|||=||||||||||||*
targets:3207   CUUCGCAGAUGACUUACUGGUAU   3229

3.0 PREDICTED: Brassica napus uncharacterized LOC106442576 (LOC106442576), mRNA uncharacterized LOC106442576(LOC106442576) coding protein psRNATarget