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BaseInfo

ncRNA ID	novel_bna_miR1288
Species	Brassica napus
Class	miRNA
Genome position	ChrC7:8989594-8989683 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR2015555
Length	24
Mature sequence(if miRNA)	67 - AGACUCAGACUCAGCCGCAGACGC - 90
Stem-loop(if miRNA)	-A -               U G  A       UUCU UU  UU GG   G CUGUGGCUGAGUCUG G CU CGGCUGC    A  CG  U  U   | ||||||||||||||| | || |||||||    |  ||  |  U   C GACGCCGACUCAGAC C GA GCCGACG    U  GC  G  G CG A               U A  C       ---U UU  UU UU
Stem-loop sequence	AGCUGUGGCUGAGUCUGUGGCUACGGCUGCUUCUAUUCGUUUGGUUGUUGUUCGUUUUGCAGCCGCAGACUCAGACUCAGCCGCAGACGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013894729.1	ncRNA:24   CGC--AGACGCCGACUCAGACUCAGA   1   |||--||||*|*|||||||||||||| targets:89   GCGAGUCUGAGUCUGAGUCUGAGUCU   114 Target Full Sequence	2.0	PREDICTED: Brassica napus GATA transcription factor 4-like (LOC106452579), mRNA	GATA transcription factor 4-like(LOC106452579)	coding protein	psRNATarget
XM_013824901.1	ncRNA:24   CGCAGACGCCGACUCAGACUCAGA   1   ***||||*|*|||||||||||||| targets:183   CACUCUGAGUCUGAGUCUGAGUCU   206 Target Full Sequence	2.0	PREDICTED: Brassica napus alpha-galactosidase 2-like (LOC106384972), mRNA	alpha-galactosidase 2-like(LOC106384972)	coding protein	psRNATarget
XM_013788187.1	ncRNA:24   CGCAGACGCCGACUCAGACUCAGA   1   ||*||*|*|*|||||||||||||| targets:707   GCUUCCGAGACUGAGUCUGAGUCU   730 Target Full Sequence	3.0	PREDICTED: Brassica napus trihelix transcription factor ASIL1-like (LOC106348449), mRNA	trihelix transcription factor ASIL1-like(LOC106348449)	coding protein	psRNATarget
XM_013785011.1	ncRNA:24   CGCAGACGCCGACUCAGACUCAGA   1   ||*||*|*|*|||||||||||||| targets:694   GCUUCCGAGUCUGAGUCUGAGUCU   717 Target Full Sequence	3.0	PREDICTED: Brassica napus trihelix transcription factor ASIL1-like (LOC106345824), mRNA	trihelix transcription factor ASIL1-like(LOC106345824)	coding protein	psRNATarget
XM_013884817.1	ncRNA:24   CGCAGACGCCGACUCAGACUCAGA   1   ||*||*|*|*|||||||||||||| targets:704   GCUUCCGAGACUGAGUCUGAGUCU   727 Target Full Sequence	3.0	PREDICTED: Brassica napus trihelix transcription factor ASIL1-like (LOC106443242), mRNA	trihelix transcription factor ASIL1-like(LOC106443242)	coding protein	psRNATarget
XM_013872465.1	ncRNA:24   CGCAGACGCCGACUCAGACUCAGA   1   ||*||*|*|*|||||||||||||| targets:729   GCUUCCGAGACUGAGUCUGAGUCU   752 Target Full Sequence	3.0	PREDICTED: Brassica napus trihelix transcription factor ASIL1-like (LOC106431660), mRNA	trihelix transcription factor ASIL1-like(LOC106431660)	coding protein	psRNATarget
XM_013872464.1	ncRNA:24   CGCAGACGCCGACUCAGACUCAGA   1   ||*||*|*|*|||||||||||||| targets:730   GCUUCCGAGACUGAGUCUGAGUCU   753 Target Full Sequence	3.0	PREDICTED: Brassica napus trihelix transcription factor ASIL1-like (LOC106431659), mRNA	trihelix transcription factor ASIL1-like(LOC106431659)	coding protein	psRNATarget