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BaseInfo

ncRNA ID	novel_bna_miR1277
Species	Brassica napus
Class	miRNA
Genome position	ChrC5:29886877-29887019 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR2015555
Length	24
Mature sequence(if miRNA)	1 - CGAUAUGUGGAAGUGGGUAGCUGU - 24
Stem-loop(if miRNA)	--    A   G      -    G   UCUU   --    U    U   ---U  AUCGGUAAAGUCGACGCAGAC   CGAU UGU GAAGUG GGUA CUG    UGG  GGCA GCCU GUU    AG                     G   |||| ||| |||||| |||| |||    |||  |||| |||| |||    ||                     C   GUUA GCG CUUCAU UCAU GGC    ACC  UCGU UGGG CAG    AG                     G AA    -   G      G    G   -CUC   AA    U    C   CAGC  UUCUUCUUCUUGCCUUUCACC
Stem-loop sequence	CGAUAUGUGGAAGUGGGUAGCUGUCUUUGGGGCAUGCCUUGUUUAGAUCGGUAAAGUCGACGCAGACGCGCCACUUUCCGUUCUUCUUCUUGACGACGACCGGGUUUGCUAACCACUCCGGGUACUGUACUUCGGCGAUUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013818198.1	ncRNA:24   UGUCGAUGGGUGAAGGUGUAUAGC   1   ||||=|||||||||||*||||||| targets:1046   ACAGUUACCCACUUCCUCAUAUCG   1069 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106377985 (LOC106377985), partial mRNA	uncharacterized LOC106377985(LOC106377985)	coding protein	psRNATarget
XM_013862937.1	ncRNA:24   UGUCGAUGGGUGAAGGUGUAUAGC   1   ||||=|||||=|||||=||||||| targets:224   ACAGUUACCCGCUUCCGCAUAUCG   247 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106422107 (LOC106422107), mRNA	uncharacterized LOC106422107(LOC106422107)	coding protein	psRNATarget
XM_013844420.1	ncRNA:24   UGUCGAUGGGUGAAGGUGUAUAGC   1   ||||=|||||=|||||=||||||| targets:1991   ACAGUUACCCGCUUCCGCAUAUCG   2014 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106403604 (LOC106403604), mRNA	uncharacterized LOC106403604(LOC106403604)	coding protein	psRNATarget
XM_013868290.1	ncRNA:24   UGUCGAUGGGUGAAGGUGUAUAGC   1   ||||=|||||=|||||=||||||| targets:2252   ACAGUUACCCGCUUCCGCAUAUCG   2275 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106427566 (LOC106427566), mRNA	uncharacterized LOC106427566(LOC106427566)	coding protein	psRNATarget
XM_013849420.1	ncRNA:24   UGUCGAUGGGUGAAGGUGUAUAGC   1   ||||=|||||=|||||=||||||| targets:2417   ACAGUUACCCGCUUCCGCAUAUCG   2440 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106408705 (LOC106408705), mRNA	uncharacterized LOC106408705(LOC106408705)	coding protein	psRNATarget