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BaseInfo

ncRNA ID novel_bna_miR1274
Species Brassica napus
Class miRNA
Genome position ChrC4:31190406-31190456 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 21
Mature sequence(if miRNA) 31 - UCCAUAAUUAGGUUGUUGGUA - 51
Stem-loop(if miRNA) --     -C   CC      -    CU
  CCAAC  CCU  AUUAUG AGUU  C
  |||||  |||  |||||| ||||
  GGUUG  GGA  UAAUAC UCAA  U
AU     UU   -U      C    UC
Stem-loop sequence CCAACCCCUCCAUUAUGAGUUCUCUCUAACUCCAUAAUUAGGUUGUUGGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013790150.1
ncRNA:21   AUGGUUGUUGGAUUAAUACCU   1
  *||||||||||||||||||||
targets:618   CACCAACAACCUAAUUAUGGA   638

0.0 PREDICTED: Brassica napus uncharacterized LOC106350242 (LOC106350242), mRNA uncharacterized LOC106350242(LOC106350242) coding protein psRNATarget
XM_013813606.1
ncRNA:21   AUGGUUGUUGGAUUAAUACCU   1
  *|||||||||||||||||||=
targets:774   CACCAACAACCUAAUUAUGGG   794

1.0 PREDICTED: Brassica napus uncharacterized LOC106373435 (LOC106373435), mRNA uncharacterized LOC106373435(LOC106373435) coding protein psRNATarget