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BaseInfo

ncRNA ID	novel_bna_miR1271
Species	Brassica napus
Class	miRNA
Genome position	ChrC3:32223246-32223417 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR2015555
Length	24
Mature sequence(if miRNA)	1 - GUAGAUGACGUGGAUAGCUUUAGG - 24
Stem-loop(if miRNA)	--       U   UG   G -    GAGAGAAACCAGAA   GAAAAGAGGAAGAGACUGUUGAGAGUUAGCAUUGACAAAUUUUAUGGG   UAGGGUU AUU  UGU G CUGC              GGC                                                C   ||||||| |||  ||| | ||||              |||   AUUUCGA UAG  GCA U GAUG              AAG                                                U GG       -   GU   G A    ------AGAAAAAA   GAAACUUACCCGAAUUUUUUCAUGUUUGCUCAAAUGUAUUGUUUUAAU
Stem-loop sequence	UAGGGUUUAUUUGUGUGGCUGCGAGAGAAACCAGAAGGCGAAAAGAGGAAGAGACUGUUGAGAGUUAGCAUUGACAAAUUUUAUGGGCUUAAUUUUGUUAUGUAAACUCGUUUGUACUUUUUUAAGCCCAUUCAAAGGAAAAAAAAGAGUAGAUGACGUGGAUAGCUUUAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013817742.1	ncRNA:24   GGAUUUCGAUAGGUGCAGUAGAUG   1   ***=|||||||||||||||||*|= targets:43   AGAGAAGCUAUCCACGUCAUCAAU   66 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377492 (LOC106377492), transcript variant X6, mRNA	uncharacterized LOC106377492(BNAA01G30200D)	coding protein	psRNATarget
XM_013817737.1	ncRNA:24   GGAUUUCGAUAGGUGCAGUAGAUG   1   ***=|||||||||||||||||*|= targets:43   AGAGAAGCUAUCCACGUCAUCAAU   66 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377492 (LOC106377492), transcript variant X1, mRNA	uncharacterized LOC106377492(BNAA01G30200D)	coding protein	psRNATarget
XM_013817739.1	ncRNA:24   GGAUUUCGAUAGGUGCAGUAGAUG   1   ***=|||||||||||||||||*|= targets:43   AGAGAAGCUAUCCACGUCAUCAAU   66 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377492 (LOC106377492), transcript variant X3, mRNA	uncharacterized LOC106377492(BNAA01G30200D)	coding protein	psRNATarget
XM_013817741.1	ncRNA:24   GGAUUUCGAUAGGUGCAGUAGAUG   1   ***=|||||||||||||||||*|= targets:43   AGAGAAGCUAUCCACGUCAUCAAU   66 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377492 (LOC106377492), transcript variant X5, mRNA	uncharacterized LOC106377492(BNAA01G30200D)	coding protein	psRNATarget
XM_013817740.1	ncRNA:24   GGAUUUCGAUAGGUGCAGUAGAUG   1   ***=|||||||||||||||||*|= targets:43   AGAGAAGCUAUCCACGUCAUCAAU   66 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106377492 (LOC106377492), transcript variant X4, mRNA	uncharacterized LOC106377492(BNAA01G30200D)	coding protein	psRNATarget