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BaseInfo

ncRNA ID novel_bna_miR1258
Species Brassica napus
Class miRNA
Genome position ChrC2:22907452-22907519 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 21
Mature sequence(if miRNA) 1 - AUUUACAUGGAAGUCGUCUCA - 21
Stem-loop(if miRNA) --                   CAAA      U   U
  AUUUACAUGGAAGUCGUCU    AUUUUU UUU A
  |||||||||||||||||||    |||||| |||
  UGAAUGUACCUUCAGCAGG    UAGAAA AAA A
GC                   ----      C   C
Stem-loop sequence AUUUACAUGGAAGUCGUCUCAAAAUUUUUUUUUUAACAAACAAAGAUGGACGACUUCCAUGUAAGUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013834115.1
ncRNA:21   ACUCUGCUGAAGGUACAUUUA   1
  ***||||||||||||||*|||
targets:1042   CUUGACGACUUCCAUGUCAAU   1062

2.5 PREDICTED: Brassica napus uncharacterized LOC106393415 (LOC106393415), mRNA uncharacterized LOC106393415(LOC106393415) coding protein psRNATarget
XM_013813326.1
ncRNA:21   ACUCUGCUGAAGGUACAUUUA   1
  **|||*||||||||||||*||
targets:1138   CAAGAAGACUUCCAUGUAUAU   1158

2.5 PREDICTED: Brassica napus uncharacterized LOC106373103 (LOC106373103), mRNA uncharacterized LOC106373103(LOC106373103) coding protein psRNATarget