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BaseInfo

ncRNA ID novel_bna_miR1249
Species Brassica napus
Class miRNA
Genome position ChrA9:1228806-1228996 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 168 - GACUCGGGUAGAAAUGGACGGGCA - 191
Stem-loop(if miRNA) --   U    U    A   -A    CACAAC   --    AGC            GAUCGUCGU      UUCUCU   -   ----        -   -  G  C
  GAC CGGG AGAA UGG  CGGG      CCG  CGUC   CAACCCGCGUCG         CGAGGA      GCC AUG    CGCGCGGG UGG GC AU C
  ||| |||| |||| |||  ||||      |||  ||||   ||||||||||||         ||||||      ||| |||    |||||||| ||| || || U
  UUG GCCC UCUU ACU  GCCC      GGC  GCAG   GUUGGGCGCAGU         GCUUCU      CGG UAU    GUGCGCCC GCC CG UG G
GG   C    C    -   GC    AACCAC   UA    --A            ---------      CUUCCU   C   CUAA        U   U  G  C
Stem-loop sequence GACUCGGGUAGAAAUGGACGGGCACAACCCGCGUCAGCCAACCCGCGUCGGAUCGUCGUCGAGGAUUCUCUGCCAUGCGCGCGGGUGGGCGAUCCUGCGUGGCUCCGUCCCGCGUGAAUCUAUCGGCUCCUUCUCUUCGUGACGCGGGUUGAGACGAUCGGCACCAACCCGCGUCAUUCUCCCCGCGUUGG