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BaseInfo

ncRNA ID novel_bna_miR1247
Species Brassica napus
Class miRNA
Genome position ChrA9:20479674-20479725 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 23
Mature sequence(if miRNA) 30 - ACAUAUUUAUGUAGAGUUUGGCA - 52
Stem-loop(if miRNA) --      ---U         UUU   AG
  ACAUAU    UAUGUAGAG   GGC  A
  ||||||    |||||||||   |||
  UGUGUA    GUACAUCUC   UCG  G
CC      CAGU         ---   AA
Stem-loop sequence ACAUAUUUAUGUAGAGUUUGGCAGAGAAGCUCUCUACAUGUGACAUGUGUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013800840.1
ncRNA:23   ACG-GUUUGAGAUGUAUUUAUACA   1
  ||=-=||||*|||||||*||||||
targets:28   UGUGUAAACCCUACAUAUAUAUGU   51

2.5 PREDICTED: Brassica napus serine hydroxymethyltransferase 3, chloroplastic-like (LOC106361137), mRNA serine hydroxymethyltransferase 3, chloroplastic-like(LOC106361137) coding protein psRNATarget