ncRNA ID | novel_bna_miR1237 |
Species | Brassica napus |
Class | miRNA |
Genome position | ChrA8:8836804-8836958 [-] |
Reference genome | Brassica_napus_assembly_v1.0 |
Source | SRR2015555 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGUAAAUUAUGGAGUGGGGAUGGA - 24 |
Stem-loop(if miRNA) |
--                      CCA           GG         -A    CAAA          ----UCU  C  U   CAUUCCUACUCCAUAAUUUACU   AAAAUGGAGUG  AAAUGGAGU  UGAA    AAAUAAAAAA       CU CA U   ||||||||||||||||||||||   |||||||||||  |||||||||  ||||    ||||||||||       || ||   GUAGGGGUGAGGUAUUAAAUGA   UUUUAUCUCAC  UUUAUCUCA  ACUU    UUUGUUUUUU       GA GU U AG                      -CG           UU         AC    ---C          CACUAAU  C  A |
Stem-loop sequence | CAUUCCUACUCCAUAAUUUACUCCAAAAAUGGAGUGGGAAAUGGAGUAUGAACAAAAAAUAAAAAAUCUCUCCAUUUAUGCAGUAAUCACUUUUUUGUUUCUUCACAACUCUAUUUUUCACUCUAUUUUGCAGUAAAUUAUGGAGUGGGGAUGGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_013803286.1 |
|
2.0 | PREDICTED: Brassica napus uncharacterized LOC106363567 (LOC106363567), partial mRNA | uncharacterized LOC106363567(LOC106363567) | coding protein | psRNATarget |