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BaseInfo

ncRNA ID novel_bna_miR1237
Species Brassica napus
Class miRNA
Genome position ChrA8:8836804-8836958 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 1 - AGUAAAUUAUGGAGUGGGGAUGGA - 24
Stem-loop(if miRNA) --                      CCA           GG         -A    CAAA          ----UCU  C  U
  CAUUCCUACUCCAUAAUUUACU   AAAAUGGAGUG  AAAUGGAGU  UGAA    AAAUAAAAAA       CU CA U
  ||||||||||||||||||||||   |||||||||||  |||||||||  ||||    ||||||||||       || ||
  GUAGGGGUGAGGUAUUAAAUGA   UUUUAUCUCAC  UUUAUCUCA  ACUU    UUUGUUUUUU       GA GU U
AG                      -CG           UU         AC    ---C          CACUAAU  C  A
Stem-loop sequence CAUUCCUACUCCAUAAUUUACUCCAAAAAUGGAGUGGGAAAUGGAGUAUGAACAAAAAAUAAAAAAUCUCUCCAUUUAUGCAGUAAUCACUUUUUUGUUUCUUCACAACUCUAUUUUUCACUCUAUUUUGCAGUAAAUUAUGGAGUGGGGAUGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013803286.1
ncRNA:24   AGGUAGGGGUGAGGUAUUAAAUGA   1
  |||||||*=|||||||||||||||
targets:1564   UCCAUCCAUACUCCAUAAUUUACU   1587

2.0 PREDICTED: Brassica napus uncharacterized LOC106363567 (LOC106363567), partial mRNA uncharacterized LOC106363567(LOC106363567) coding protein psRNATarget