Search result

BaseInfo

ncRNA ID novel_bna_miR1234
Species Brassica napus
Class miRNA
Genome position ChrA8:10416780-10416836 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 23
Mature sequence(if miRNA) 1 - AGUGCAAAAAUAUAGAGACAGUA - 23
Stem-loop(if miRNA) --           A   A   A      
  AGUGCAAAAAU UAG GAC GUAACCG
  ||||||||||| ||| ||| ||||||C
  UCACGUUUUUA AUC CUG CAUUGGC
UA           C   G   A      
Stem-loop sequence AGUGCAAAAAUAUAGAGACAGUAACCGCCGGUUACAGUCGCUACAUUUUUGCACUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013879299.1
ncRNA:23   AU-GACAGAGAUAUAAAAACGUGA   1
  ||-=|*||||*||||||||||||*
targets:1552   UAGUUUUCUCGAUAUUUUUGCACG   1575

3.0 PREDICTED: Brassica napus arogenate dehydrogenase 1, chloroplastic (LOC106438203), mRNA arogenate dehydrogenase 1, chloroplastic(LOC106438203) coding protein psRNATarget