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BaseInfo

ncRNA ID novel_bna_miR1233
Species Brassica napus
Class miRNA
Genome position ChrA2:20566261-20566325 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR1363495
Length 23
Mature sequence(if miRNA) 43 - UUUUCGGAUCGGGUUCGGGUGCA - 65
Stem-loop(if miRNA) -UUUUC   UC    UC   UG --A    CAG
      GGA  GGGU  GGG  C   GCUU   A
      |||  ||||  |||  |   ||||
      CCU  UCCA  CCC  G   UGGG   C
UAAAAA   CA    GA   GU AAA    CUA
Stem-loop sequence UUUUCGGAUCGGGUUCGGGUGCAGCUUCAGACAUCGGGUAAAGUGCCCAGACCUACUCCAAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013857367.1
ncRNA:23   ACGUGGGCUUGGGCUAGGCUUUU   1
  *||||||||||||||||||||||
targets:821   CGCACCCGAACCCGAUCCGAAAA   843

0.0 PREDICTED: Brassica napus transcription factor bHLH35-like (LOC106416474), mRNA transcription factor bHLH35-like(LOC106416474) coding protein psRNATarget