Search result

BaseInfo

ncRNA ID novel_bna_miR1231
Species Brassica napus
Class miRNA
Genome position ChrA7:3877239-3877307 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 1 - GUUUGGAUUUAGAGUUUACGGUUU - 24
Stem-loop(if miRNA) ----------A            G  UAC    UG  UU
           UUUGGAUUUAAG UU   AGUU  GU  A
           |||||||||||| ||   ||||  ||  G
           AGAUUUAGGUUU AG   UUAG  UA  G
UUUGGCAUUUG            G  --U    GA  UA
Stem-loop sequence AUUUGGAUUUAAGGUUUACAGUUUGGUUUAGGAUAUAGGAUUUGAGUUUGGAUUUAGAGUUUACGGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013840385.1
ncRNA:24   UU---UG-GCAUUUGAGAUUUAGGUUUG   1
  ||---||-||*||*||||||||||||||
targets:153   AAUCCACACGCAAUCUCUAAAUCCAAAC   180

2.0 PREDICTED: Brassica napus calmodulin-like protein 6 (LOC106399946), mRNA calmodulin-like protein 6(LOC106399946) coding protein psRNATarget
XM_013835759.1
ncRNA:24   UU---UG-GCAUUUGAGAUUUAGGUUUG   1
  ||---||-||*||*||||||||||||||
targets:153   AAUCCACACGCAAUCUCUAAAUCCAAAC   180

2.0 PREDICTED: Brassica napus calmodulin-like protein 6 (LOC106395246), mRNA calmodulin-like protein 6(LOC106395246) coding protein psRNATarget