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BaseInfo

ncRNA ID novel_bna_miR1219
Species Brassica napus
Class miRNA
Genome position ChrA6:14795072-14795133 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 24
Mature sequence(if miRNA) 39 - AAGUUGAUCUUUAGGCAUUUCUCA - 62
Stem-loop(if miRNA) --A     A    U         -   CC   
   AGUUG UCUU AGGCAUUUC UCA  CACA
   ||||| |||| ||||||||| |||  |||A
   UCAAC AGAG UCCGUAAAG AGU  GUGG
CUC     -    -         U   UU   
Stem-loop sequence AAGUUGAUCUUUAGGCAUUUCUCACCCACAAGGUGUUUGAUGAAAUGCCUGAGACAACUCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013853516.1
ncRNA:24   ACUC-UUUACGGAUUUCUAGUUGAA   1
  ||=|-|||||=|||||||||||||*
targets:657   UGGGCAAAUGUCUAAAGAUCAACUA   681

2.0 PREDICTED: Brassica napus uncharacterized ATP-dependent helicase MPN_020-like (LOC106412595), mRNA uncharacterized ATP-dependent helicase MPN_020-like(LOC106412595) coding protein psRNATarget