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BaseInfo

ncRNA ID	novel_bna_miR1218
Species	Brassica napus
Class	miRNA
Genome position	ChrA6:28595337-28595392 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR2015555
Length	24
Mature sequence(if miRNA)	33 - GGAUUCGGAUUCGGUUUGGACGGA - 56
Stem-loop(if miRNA)	--              ----------      C   GGAUUCGGAUUCGG          UUUGGA G   ||||||||||||||          ||||||   CUUAGGCUUAAGUC          GAACCU G GG              UAUCAUUUUA      A
Stem-loop sequence	GGAUUCGGAUUCGGUUUGGACGGAUCCAAGAUUUUACUAUCUGAAUUCGGAUUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013785772.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||=|||||||||||||||| targets:278   UCCGGUCAUGCUCCGAACCGAAUCCGAAUCC   308 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106346439 (LOC106346439), mRNA	uncharacterized LOC106346439(LOC106346439)	coding protein	psRNATarget
XM_013825731.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||||||||||||=|||||| targets:814   UCCGGUUAUCUUCCAAACCGAAUCUGAAUCC   844 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106385829 (LOC106385829), transcript variant X3, mRNA	uncharacterized LOC106385829(LOC106385829)	coding protein	psRNATarget
XM_013825730.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||||||||||||=|||||| targets:831   UCCGGUUAUCUUCCAAACCGAAUCUGAAUCC   861 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106385829 (LOC106385829), transcript variant X2, mRNA	uncharacterized LOC106385829(LOC106385829)	coding protein	psRNATarget
XM_013825729.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||||||||||||=|||||| targets:840   UCCGGUUAUCUUCCAAACCGAAUCUGAAUCC   870 Target Full Sequence	1.5	PREDICTED: Brassica napus uncharacterized LOC106385829 (LOC106385829), transcript variant X1, mRNA	uncharacterized LOC106385829(LOC106385829)	coding protein	psRNATarget
XM_013792259.1	ncRNA:24   AGGCAGGUUUGGCUUAGGCUUAGG   1   |*=|*=||||=||||||||||||| targets:167   UAUGAUCAAAUCGAAUCCGAAUCC   190 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106352627 (LOC106352627), transcript variant X2, mRNA	uncharacterized LOC106352627(BNAA09G51360D)	coding protein	psRNATarget
XM_013792253.1	ncRNA:24   AGGCAGGUUUGGCUUAGGCUUAGG   1   |*=|*=||||=||||||||||||| targets:167   UAUGAUCAAAUCGAAUCCGAAUCC   190 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized LOC106352627 (LOC106352627), transcript variant X1, mRNA	uncharacterized LOC106352627(BNAA09G51360D)	coding protein	psRNATarget
XM_013811369.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||=|||||||||=|||||| targets:307   UCCGGUCAUGUUCCGAACCGAAUCUGAAUCC   337 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106371317 (LOC106371317), mRNA	uncharacterized LOC106371317(LOC106371317)	coding protein	psRNATarget
XM_013851955.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||=|||||||||=|||||| targets:301   UCCGGUUAUCUUCCGAACCGAAUCUGAAUCC   331 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106411239 (LOC106411239), mRNA	uncharacterized LOC106411239(LOC106411239)	coding protein	psRNATarget
XM_013865875.1	ncRNA:24   AGGC-------AGGUUUGGCUUAGGCUUAGG   1   ||||-------|||=|||||||||=|||||| targets:339   UCCGGUUAUCUUCCGAACCGAAUCUGAAUCC   369 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106425149 (LOC106425149), mRNA	uncharacterized LOC106425149(LOC106425149)	coding protein	psRNATarget
XM_013851499.1	ncRNA:24   AGG---CAGGUUUGGCUUAGGCUUAGG   1   |||---|*||||||||=|||||||||* targets:349   UCCCCGGCCCAAACCGGAUCCGAAUCG   375 Target Full Sequence	2.5	PREDICTED: Brassica napus serine/threonine-protein phosphatase BSL3-like (LOC106410869), mRNA	serine/threonine-protein phosphatase BSL3-like(LOC106410869)	coding protein	psRNATarget
XM_013806894.1	ncRNA:24   AGGCAGGUUU-GGCUUAGGCUUAGG   1   ***||||=||-|||||||||||||| targets:326   AGAGUCCGAAUCCGAAUCCGAAUCC   350 Target Full Sequence	3.0	PREDICTED: Brassica napus uncharacterized LOC106367178 (LOC106367178), mRNA	uncharacterized LOC106367178(BNAA02G02650D)	coding protein	psRNATarget
XM_013785086.1	ncRNA:24   AGGCAGGUUU-GGCUUAGGCUUAGG   1   |***|||=||-|||||||||||||| targets:601   UGAAUCCGAAUCCGAAUCCGAAUCC   625 Target Full Sequence	3.0	PREDICTED: Brassica napus F-box protein At5g51380-like (LOC106345879), mRNA	F-box protein At5g51380-like(LOC106345879)	coding protein	psRNATarget