Search result

BaseInfo

ncRNA ID	novel_bna_miR1206
Species	Brassica napus
Class	miRNA
Genome position	ChrA10:6135086-6135253 [+]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR2015555
Length	24
Mature sequence(if miRNA)	1 - AAGAGCAUCUCCAAAGGCACUCUA - 24
Stem-loop(if miRNA)	--A   G         A  C       UU   C  C    A     A                            GAACCAU    G    AGA CAUCUCCAA GG ACUCUAU  UUU CU UAUA UUUAC CUAAAAUAGAGUAACUCUAUUAUAGAGU       UGGA C    ||| ||||||||| || |||||||  ||| || |||| ||||| ||||||||||||||||||||||||||||       |||| A    UCU GUAGAGGUU CC UGAGAUA  AAA GA AUAU AAGUG GAUUUUAUCUCAUUGAGAUAAUAUCUCA       ACCU A GAA   G         A  A       UU   A  A    G     A                            -------    A
Stem-loop sequence	AAGAGCAUCUCCAAAGGCACUCUAUUUUUUCCUCUAUAAUUUACACUAAAAUAGAGUAACUCUAUUAUAGAGUGAACCAUUGGAGCAAAUCCAACUCUAUAAUAGAGUUACUCUAUUUUAGAGUGAAGUAUAAAGAAAAUUAUAGAGUACCAUUGGAGAUGGUCUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013832429.1	ncRNA:24   AUCUCACGGAAACCUCUACGAGAA   1   *|||*|||=||||||||||||||| targets:1441   AAGAAUGCUUUUGGAGAUGCUCUU   1464 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106391726 (LOC106391726), transcript variant X2, mRNA	uncharacterized LOC106391726(BNAC04G48220D)	coding protein	psRNATarget
XM_013832428.1	ncRNA:24   AUCUCACGGAAACCUCUACGAGAA   1   *|||*|||=||||||||||||||| targets:1455   AAGAAUGCUUUUGGAGAUGCUCUU   1478 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106391726 (LOC106391726), transcript variant X1, mRNA	uncharacterized LOC106391726(BNAC04G48220D)	coding protein	psRNATarget
XM_013889535.1	ncRNA:24   AUCUCACGGAAACCUCUACGAGAA   1   *|||*||||||||||||||||||* targets:1452   AAGAAUGCCUUUGGAGAUGCUCUG   1475 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106447580 (LOC106447580), mRNA	uncharacterized LOC106447580(LOC106447580)	coding protein	psRNATarget
XM_013889534.1	ncRNA:24   AUCUCACGGAAACCUCUACGAGAA   1   *|||*||||||||||||||||||* targets:1453   AAGAAUGCCUUUGGAGAUGCUCUG   1476 Target Full Sequence	1.0	PREDICTED: Brassica napus uncharacterized LOC106447579 (LOC106447579), mRNA	uncharacterized LOC106447579(LOC106447579)	coding protein	psRNATarget