Search result

BaseInfo

ncRNA ID novel_bna_miR1205
Species Brassica napus
Class miRNA
Genome position ChrA5:34942602-34942663 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555;SRR1363495
Length 24
Mature sequence(if miRNA) 39 - AAGUUGAUCUUUAGGCAUUUCUCA - 62
Stem-loop(if miRNA) --A     AUC            -----U    C
   AGUUG   UUUAGGCAUUUC      CACC A
   |||||   ||||||||||||      |||| A
   UUAAC   AAGUUCGUAAAG      GUGG A
UUC     --A            UAGCUU    A
Stem-loop sequence AAGUUGAUCUUUAGGCAUUUCUCACCCAAAAGGUGUUCGAUGAAAUGCUUGAAACAAUUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013853516.1
ncRNA:24   ACUC-UUUACGGAUUUCUAGUUGAA   1
  ||=|-|||||=|||||||||||||*
targets:657   UGGGCAAAUGUCUAAAGAUCAACUA   681

2.0 PREDICTED: Brassica napus uncharacterized ATP-dependent helicase MPN_020-like (LOC106412595), mRNA uncharacterized ATP-dependent helicase MPN_020-like(LOC106412595) coding protein psRNATarget