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BaseInfo

ncRNA ID novel_bna_miR1201
Species Brassica napus
Class miRNA
Genome position ChrA4:22939461-22939591 [-]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555
Length 23
Mature sequence(if miRNA) 1 - GAGACGGUUCUUAUAUUACGCUA - 23
Stem-loop(if miRNA) --                                                A A  C C       
  GCGUAAUAUAAGAACCGUCUCUUAACUUUUAACUAAGAAAAGCUAAGA C GA U UUAAAUAU
  |||||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||C
  CGCAUUAUAUUCUUGGCAGAGAAUUGAAAAUUGAUUCUUUUUGAUUCU G CU A AAUUUAUU
AU                                                C G  A A       
Stem-loop sequence GCGUAAUAUAAGAACCGUCUCUUAACUUUUAACUAAGAAAAGCUAAGAACAGACUCUUAAAUAUCUUAUUUAAAAAUCGGCUCUUAGUUUUUCUUAGUUAAAAGUUAAGAGACGGUUCUUAUAUUACGCUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013800592.1
ncRNA:23   AUCGCAUUAUAUUCUUGGCAGAG   1
  |**|||=|||||||||*||||||
targets:73   UCUCGUGAUAUAAGAAACGUCUC   95

2.5 PREDICTED: Brassica napus protein ASPARTIC PROTEASE IN GUARD CELL 1-like (LOC106360916), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 1-like(LOC106360916) coding protein psRNATarget