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BaseInfo

ncRNA ID ath-miR846-3p
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:22577375-22577733 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 288 - UUGAAUUGAAGUGCUUGAAUU - 308
Stem-loop(if miRNA) -CAAA   --C      ---   UU  -GGU   U        UGCCAC   C   U C       G     U         A   U   U     C   A  A  U            U     C    A         AUUCAAGGGACAAAA     ---- UGGGAUAUAUGAUUAUGACAAACACGAUUG
     CAU   UUGAAU   CCG  GA    UGA CACGAUGA      AUC GGU U AUUCAAG ACUUC AUUCAGAAC AAC UCA GAUUU UGA CU AU GGAUAUGAUAAA GGUAA AAGU UUCACUUGC               AAUCA    U                              G
     |||   ||||||   |||  ||    ||| ||||||||      ||| ||| | ||||||| ||||| ||||||||| ||| ||| ||||| ||| || || |||||||||||| ||||| |||| |||||||||               |||||    |
     GUA   AGCUUA   GGC  CU    GCU GUGUUAUU      UAG CCA A UAAGUUC UGAAG UAAGUUUUG UUG AGU CUGAA GCU GA UA CCUAUACUAUUU UCAUU UUCA AGGUGAACG               CUAGU    G                              A
AACCA   AUC      AAU   -C  AUGU   C        ------   A   C U       G     U         A   U   U     A   C  C  C            -     C    A         --------------U     AAUA GGUGACGAACGGAGGGCGUUGGUAAGUCGA
Stem-loop sequence CAAACAUCUUGAAUCCGUUGAGGUUGAUCACGAUGAUGCCACAUCCGGUUUCAUUCAAGGACUUCUAUUCAGAACAAACUUCAUGAUUUCUGAACUAAUUGGAUAUGAUAAAUGGUAACAAGUAUUCACUUGCAUUCAAGGGACAAAAAAUCAUUGGGAUAUAUGAUUAUGACAAACACGAUUGGAAGCUGAAUGGUUGCGGGAGGCAAGCAGUGGGAUAAUGAUCUGCAAGUGGAAACUUCUUACUUUUAUCAUAUCCCAUCAGCUCGAAAGUCUUGAUGUUAGUUUUGAAUUGAAGUGCUUGAAUUACACCAGAUUUAUUGUGCUCGUGUAUCCCGGUAAAUUCGACUAAUGACCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_104804.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||||||||||
targets:459   CAUUCAAGCACUUCAAUUCAA   479

0.0 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT1G61230) coding protein psRNATarget
NM_104804.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||||||||||||=||
targets:78   CAUUCAAGCACUUCAAUUUAA   98

1.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT1G61230) coding protein psRNATarget
NM_104094.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||||||*||||||||
targets:720   CAUUCAAGCACUGCAAUUCAA   740

1.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT1G52130) coding protein psRNATarget
NM_001333066.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||*|||||||
targets:282   UAUUCAAGCACUUAAAUUCAA   302

1.5 Arabidopsis thaliana jacalin lectin family protein partial mRNA jacalin lectin family protein(AT1G33790) coding protein psRNATarget
AY054174.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||*|||||||
targets:407   UAUUCAAGCACUUAAAUUCAA   427

1.5 Arabidopsis thaliana At1g33790/F14M2_6 mRNA, complete cds NA coding protein psRNATarget
NM_001333529.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||||||*||||||||
targets:772   CAUUCAAGCACUGCAAUUCAA   792

1.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G52130) coding protein psRNATarget
NM_001333065.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||*|||||||
targets:578   UAUUCAAGCACUUAAAUUCAA   598

1.5 Arabidopsis thaliana jacalin lectin family protein mRNA jacalin lectin family protein(AT1G33790) coding protein psRNATarget
NM_001333064.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||*|||||||
targets:597   UAUUCAAGCACUUAAAUUCAA   617

1.5 Arabidopsis thaliana jacalin lectin family protein mRNA jacalin lectin family protein(AT1G33790) coding protein psRNATarget
NM_001333063.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||*|||||||
targets:597   UAUUCAAGCACUUAAAUUCAA   617

1.5 Arabidopsis thaliana jacalin lectin family protein mRNA jacalin lectin family protein(AT1G33790) coding protein psRNATarget
AK229108.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||*||||||||||||
targets:453   CAUUCAAGGACUUCAAUUCAA   473

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-39-D01 NA coding protein psRNATarget
AK229108.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||*|||||||||||
targets:891   UAUUCAAGCCCUUCAAUUCAA   911

1.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-39-D01 NA coding protein psRNATarget
NM_104554.4
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||*||||||||||||
targets:476   CAUUCAAGGACUUCAAUUCAA   496

1.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G57570) coding protein psRNATarget
NM_104554.4
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||*|||||||||||
targets:914   UAUUCAAGCCCUUCAAUUCAA   934

1.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G57570) coding protein psRNATarget
NM_001160918.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||||||||||||*|||||||
targets:407   UAUUCAAGCACUUAAAUUCAA   427

1.5 Arabidopsis thaliana jacalin lectin family protein mRNA jacalin lectin family protein(AT1G33790) coding protein psRNATarget
BT003160.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||||||||=|||||=
targets:714   CAUUCAAGCACUUCGAUUCAG   734

2.5 Arabidopsis thaliana At5g49850 mRNA, complete cds NA coding protein psRNATarget
BT003160.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||||||*||||||||||=||
targets:264   GAUUCAAACACUUCAAUUUAA   284

2.5 Arabidopsis thaliana At5g49850 mRNA, complete cds NA coding protein psRNATarget
NM_104092.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||=|||||||=||||||
targets:780   CAUUCAGGCACUUCGAUUCAA   800

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT1G52110) coding protein psRNATarget
NM_104092.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*||||||||||||||=||
targets:381   GAUCCAAGCACUUCAAUUUAA   401

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT1G52110) coding protein psRNATarget
AK227703.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||||||||=|||||=
targets:788   CAUUCAAGCACUUCGAUUCAG   808

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-29-F23 NA coding protein psRNATarget
AK227703.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||||||*||||||||||=||
targets:338   GAUUCAAACACUUCAAUUUAA   358

2.5 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-29-F23 NA coding protein psRNATarget
NM_124363.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *|||||||||||||=|||||=
targets:788   CAUUCAAGCACUUCGAUUCAG   808

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT5G49850) coding protein psRNATarget
NM_124363.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||||||*||||||||||=||
targets:338   GAUUCAAACACUUCAAUUUAA   358

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT5G49850) coding protein psRNATarget
AY133579.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||||||||=|
targets:270   GAUCCAAGCACUUCAAUUCGA   290

2.5 Arabidopsis thaliana At2g25980/T19L18.21 mRNA, complete cds NA coding protein psRNATarget
AY078966.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||||||||=|
targets:317   GAUCCAAGCACUUCAAUUCGA   337

2.5 Arabidopsis thaliana At2g25980/T19L18.21 mRNA, complete cds NA coding protein psRNATarget
NM_001336032.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||||||||=|
targets:350   GAUCCAAGCACUUCAAUUCGA   370

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT2G25980) coding protein psRNATarget
NM_128157.4
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||||||||=|
targets:367   GAUCCAAGCACUUCAAUUCGA   387

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT2G25980) coding protein psRNATarget
AF367353.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =|||*|||||||||||||=||
targets:235   GAUUGAAGCACUUCAAUUUAA   255

2.5 Arabidopsis thaliana AT5g49870/K9P8_1 mRNA, complete cds NA coding protein psRNATarget
NM_124365.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =|||*|||||||||||||=||
targets:273   GAUUGAAGCACUUCAAUUUAA   293

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT5G49870) coding protein psRNATarget
NM_001344861.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =|||*|||||||||||||=||
targets:334   GAUUGAAGCACUUCAAUUUAA   354

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT5G49870) coding protein psRNATarget
BT005551.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:330   GAUGCAAGCACUUGAAUUCAA   350

2.5 Arabidopsis thaliana clone U51061 putative jasmonate inducible protein (At1g52070) mRNA, complete cds NA coding protein psRNATarget
AK118817.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:354   GAUGCAAGCACUUGAAUUCAA   374

2.5 Arabidopsis thaliana At1g52070 mRNA for unknown protein, complete cds, clone: RAFL21-15-C19 NA coding protein psRNATarget
NM_104086.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*||||||||*||||||||
targets:483   GAUGCAAGCACUCCAAUUCAA   503

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G52050) coding protein psRNATarget
NM_104088.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:355   GAUGCAAGCACUUGAAUUCAA   375

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G52070) coding protein psRNATarget
NM_104087.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:501   GAUGCAAGCACUUGAAUUCAA   521

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G52060) coding protein psRNATarget
DQ446994.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:264   GAUCCAAGCACUUAAAUUCAA   284

2.5 Arabidopsis thaliana clone pENTR221-At5g28520 jacalin lectin family protein (At5g28520) mRNA, complete cds NA coding protein psRNATarget
NM_001333523.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:513   GAUGCAAGCACUUGAAUUCAA   533

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G52070) coding protein psRNATarget
NM_001344072.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:309   GAUCCAAGCACUUAAAUUCAA   329

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT5G28520) coding protein psRNATarget
NM_122735.4
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =||*|||||||||*|||||||
targets:264   GAUCCAAGCACUUAAAUUCAA   284

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein partial mRNA Mannose-binding lectin superfamily protein(AT5G28520) coding protein psRNATarget
NM_001333880.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =|||*|||*||||||||||||
targets:343   GAUUAAAGGACUUCAAUUCAA   363

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G60110) coding protein psRNATarget
NM_104703.3
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =|||*|||*||||||||||||
targets:357   GAUUAAAGGACUUCAAUUCAA   377

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G60110) coding protein psRNATarget
NM_001333879.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  =|||*|||*||||||||||||
targets:343   GAUUAAAGGACUUCAAUUCAA   363

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT1G60110) coding protein psRNATarget
BT004998.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||*||||||*||||||||||
targets:282   UAUGCAAGCAAUUCAAUUCAA   302

2.5 Arabidopsis thaliana clone U20434 putative myrosinase binding protein (At5g38550) mRNA, complete cds NA coding protein psRNATarget
BX831695.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||*||||||*||||||||||
targets:374   UAUGCAAGCAAUUCAAUUCAA   394

2.5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH24ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
BT004048.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||*||||||*||||||||||
targets:382   UAUGCAAGCAAUUCAAUUCAA   402

2.5 Arabidopsis thaliana clone RAFL14-92-K15 (R20434) putative myrosinase binding protein (At5g38550) mRNA, complete cds NA coding protein psRNATarget
NM_123216.6
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||*||||||*||||||||||
targets:459   UAUGCAAGCAAUUCAAUUCAA   479

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT5G38550) coding protein psRNATarget
NM_001344256.1
ncRNA:21   UUAAGUUCGUGAAGUUAAGUU   1
  *||*||||||*||||||||||
targets:459   UAUGCAAGCAAUUCAAUUCAA   479

2.5 Arabidopsis thaliana Mannose-binding lectin superfamily protein mRNA Mannose-binding lectin superfamily protein(AT5G38550) coding protein psRNATarget

Reference

1 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
3 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).
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