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BaseInfo

ncRNA ID novel_bna_miR1196
Species Brassica napus
Class miRNA
Genome position ChrA4:27711019-27711071 [+]
Reference genome Brassica_napus_assembly_v1.0
Source SRR2015555;SRR1363495
Length 24
Mature sequence(if miRNA) 30 - GGUGUAACACUGUAGCAACGGCAA - 53
Stem-loop(if miRNA) --   UU        A   C      U
  GUU  UUGCUACA UGU ACACUA A
  |||  |||||||| ||| ||||||
  CGG  AACGAUGU ACA UGUGGU U
AA   -C        C   A      U
Stem-loop sequence GUUUUUUGCUACAAUGUCACACUAUAUUUGGUGUAACACUGUAGCAACGGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_013860543.1
ncRNA:24   AACGGCAACGAUGUCACAAUGUGG   1
  ||*=||**|=||||||||||||||
targets:1541   UUAUCGCGGUUACAGUGUUACACC   1564

3.0 PREDICTED: Brassica napus cation/H(+) antiporter 9-like (LOC106419726), mRNA cation/H(+) antiporter 9-like(LOC106419726) coding protein psRNATarget