Search result

BaseInfo

ncRNA ID	novel_bna_miR1193
Species	Brassica napus
Class	miRNA
Genome position	ChrA3:5741703-5741884 [-]
Reference genome	Brassica_napus_assembly_v1.0
Source	SRR2015555
Length	21
Mature sequence(if miRNA)	1 - UAUGGAGUGGAGUUGGAGAUG - 21
Stem-loop(if miRNA)	--       GC   A      U       C     A  A       U   AG U             C           ACAC       U   UUUCCAA  CCA UCCAUA UUUAUUC AAAAU GA AAAAUGG GUG  A AUGGAGUGAUGAA AAAAAAUAAAA    UAUUUUA A   |||||||  ||| |||||| ||||||| ||||| || ||||||| |||  | ||||||||||||| |||||||||||    |||||||   AGAGGUU  GGU AGGUAU AAAUAAG UUUUA CU UUUUAUC UAC  U UACCUCAUUAUUU UUUUUUAUUUU    AUGAGGU A GU       GA   G      C       A     A  C       U   CU U             C           ACUA       A
Stem-loop sequence	UUUCCAAGCCCAAUCCAUAUUUUAUUCCAAAAUAGAAAAAAUGGUGUGAGAUAUGGAGUGAUGAACAAAAAAUAAAAACACUAUUUUAUAAAUGGAGUAAUCAUUUUAUUUUUUCUUUAUUACUCCAUUUUCCAUUCUAUUUUCUCAAUUUUAGAAUAAACUAUGGAGUGGAGUUGGAGAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_013793445.1	ncRNA:21   GUAGAGGUUGAGGUGAGGUAU   1   =*||||=|||||||||||||* targets:1413   UCUCUCUAACUCCACUCCAUU   1433 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized protein At1g01500-like (LOC106353666), transcript variant X1, mRNA	uncharacterized protein At1g01500-like(BNAA07G21830D)	coding protein	psRNATarget
XM_013793446.1	ncRNA:21   GUAGAGGUUGAGGUGAGGUAU   1   =*||||=|||||||||||||* targets:1235   UCUCUCUAACUCCACUCCAUU   1255 Target Full Sequence	2.0	PREDICTED: Brassica napus uncharacterized protein At1g01500-like (LOC106353666), transcript variant X2, mRNA	uncharacterized protein At1g01500-like(BNAA07G21830D)	coding protein	psRNATarget
XM_013804385.1	ncRNA:21   GUAGAGGUUGAGGUGAGGUAU   1   |**|||||||||=|||||||| targets:4139   CUGCUCCAACUCUACUCCAUA   4159 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106364868 (LOC106364868), mRNA	uncharacterized LOC106364868(LOC106364868)	coding protein	psRNATarget
XM_013849186.1	ncRNA:21   GUAGAGGUUGAGGUGAGGUAU   1   |**|||||||||=|||||||| targets:3310   CUGCUCCAACUCUACUCCAUA   3330 Target Full Sequence	2.5	PREDICTED: Brassica napus uncharacterized LOC106408401 (LOC106408401), mRNA	uncharacterized LOC106408401(LOC106408401)	coding protein	psRNATarget
XM_013855051.1	ncRNA:21   GUAGAGGUUGAGGUGAGGUAU   1   |*||||=|*|||||||||||| targets:227   CCUCUCUAUCUCCACUCCAUA   247 Target Full Sequence	2.5	PREDICTED: Brassica napus protein PHR1-LIKE 1-like (LOC106414381), mRNA	protein PHR1-LIKE 1-like(LOC106414381)	coding protein	psRNATarget